sb.nhri.org.tw

MrBac @ NHRI

Select a query and a reference species:. Acetobacter pasteurianus IFO 3283-01. Acetohalobium arabaticum DSM 5501. Acidaminococcus fermentans DSM 20731. Acidimicrobium ferrooxidans DSM 10331. Acidithiobacillus ferrooxidans ATCC 23270. Acidithiobacillus ferrooxidans ATCC 53993. Acidobacterium capsulatum ATCC 51196. Acidovorax avenae subsp. avenae ATCC 19860. Acidovorax sp. JS42. Acinetobacter baumannii ATCC 17978. Acinetobacter sp. ADP1. Actinobacillus pleuropneumoniae serovar 3 str. JL03. Atopobium parvul...

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MrBac @ NHRI | sb.nhri.org.tw Reviews

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Select a query and a reference species:. Acetobacter pasteurianus IFO 3283-01. Acetohalobium arabaticum DSM 5501. Acidaminococcus fermentans DSM 20731. Acidimicrobium ferrooxidans DSM 10331. Acidithiobacillus ferrooxidans ATCC 23270. Acidithiobacillus ferrooxidans ATCC 53993. Acidobacterium capsulatum ATCC 51196. Acidovorax avenae subsp. avenae ATCC 19860. Acidovorax sp. JS42. Acinetobacter baumannii ATCC 17978. Acinetobacter sp. ADP1. Actinobacillus pleuropneumoniae serovar 3 str. JL03. Atopobium parvul...

<META> KEYWORDS

1 draft reconstruction

2 how to

3 supplementary

4 example

5 query species

6 reference species

7 acaryochloris marina mbic11017

8 acholeplasma laidlawii pg 8a

9 achromobacter xylosoxidans a8

10 acidaminococcus intestini ryc mr95

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draft reconstruction,how to,supplementary,example,query species,reference species,acaryochloris marina mbic11017,acholeplasma laidlawii pg 8a,achromobacter xylosoxidans a8,acidaminococcus intestini ryc mr95,acidianus hospitalis w1,acidovorax ebreus tpsy

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MrBac @ NHRI | sb.nhri.org.tw Reviews

https://sb.nhri.org.tw

Select a query and a reference species:. Acetobacter pasteurianus IFO 3283-01. Acetohalobium arabaticum DSM 5501. Acidaminococcus fermentans DSM 20731. Acidimicrobium ferrooxidans DSM 10331. Acidithiobacillus ferrooxidans ATCC 23270. Acidithiobacillus ferrooxidans ATCC 53993. Acidobacterium capsulatum ATCC 51196. Acidovorax avenae subsp. avenae ATCC 19860. Acidovorax sp. JS42. Acinetobacter baumannii ATCC 17978. Acinetobacter sp. ADP1. Actinobacillus pleuropneumoniae serovar 3 str. JL03. Atopobium parvul...

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sb.nhri.org.tw

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MrBac @ NHRI

http://sb.nhri.org.tw/MrBac/index.jsp

Select a query and a reference species:. Acetobacter pasteurianus IFO 3283-01. Acetohalobium arabaticum DSM 5501. Acidaminococcus fermentans DSM 20731. Acidimicrobium ferrooxidans DSM 10331. Acidithiobacillus ferrooxidans ATCC 23270. Acidithiobacillus ferrooxidans ATCC 53993. Acidobacterium capsulatum ATCC 51196. Acidovorax avenae subsp. avenae ATCC 19860. Acidovorax sp. JS42. Acinetobacter baumannii ATCC 17978. Acinetobacter sp. ADP1. Actinobacillus pleuropneumoniae serovar 3 str. JL03. Atopobium parvul...

2

MrBac Supplementary Page

http://sb.nhri.org.tw/MrBac/Supplementary.jsp

Supplementary file 1. A step-by-step user guide for MrBac. Supplementary file 2. A draft network reconstruction of Salmonella enteric serovar Typhimurium LT2 (SLT2) in SBML format. Supplementary file 3. The result of genome-wide reciprocal Blast between Salmonella Typhimurium (SLT2) and Escherichia coli (ECO). File format: XLS (Excel spreadsheet). Supplementary file 4. Genomic annotations of Salmonella Typhimurium (SLT2) and Escherichia coli (ECO) retrieved from COG, KEGG and TransportDB.

3

MrBac About

http://sb.nhri.org.tw/MrBac/about.jsp

MrBac facilitates bacterial genome-scale metabolic network reconstruction through genome comparison by. I) performing reciprocal blast on query and reference bacterial ORFs of user’s choice,. Ii) retrieving gene annotations extracted from metabolic related databases with specified blast parameter settings and. Iii) reconstructing metabolic network of query species from reference network distributed in Systems Biology Markup Language (SBML). KEGG KO and Enzyme. The COGs functional categories can be divide...

4

MrBac: Network Draft Generation

http://sb.nhri.org.tw/MrBac/reconstruct.jsp

Metabolic Network Draft Generation. Draft metabolic network generation requires a reference. SBML file and the. List of reciprocal blast best hits as inputs. Draft in SBML format can be saved as the final output after query is submitted. And can be further curated and edited manually. In flux balance analysis softwares such as COBRA. Upload a reference SBML file. Upload a one to one gene pair file. Type in a model name. Division of Biostatistics and Bioinformatics,.

5

MrBac: HOW-TO

http://sb.nhri.org.tw/MrBac/example.jsp

Step 1. Select query and reference species. Step 2. One to one blastp best hits. 2b Changed blastp settings. Step 3. Annotation Selection. Step 4. Annotation retrieval. Step 5. Draft generation. 5b One to one gene list. Step 1. Select query and reference species. Step 2. One to one blastp best hits. 2b Changed blastp settings. Step 3. Annotation Selection. Step 4. Annotation retrieval. Step 5. Network draft generation. Sample reaction tag in SBML. Division of Biostatistics and Bioinformatics,.

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MrBac @ NHRI

Select a query and a reference species:. Acetobacter pasteurianus IFO 3283-01. Acetohalobium arabaticum DSM 5501. Acidaminococcus fermentans DSM 20731. Acidimicrobium ferrooxidans DSM 10331. Acidithiobacillus ferrooxidans ATCC 23270. Acidithiobacillus ferrooxidans ATCC 53993. Acidobacterium capsulatum ATCC 51196. Acidovorax avenae subsp. avenae ATCC 19860. Acidovorax sp. JS42. Acinetobacter baumannii ATCC 17978. Acinetobacter sp. ADP1. Actinobacillus pleuropneumoniae serovar 3 str. JL03. Atopobium parvul...

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