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Structural Bioinformatics and Computational Biochemistry Unit, University of Oxford

Structural Bioinformatics and Computational Biochemistry at the University of Oxford

http://sbcb.bioch.ox.ac.uk/

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Structural Bioinformatics and Computational Biochemistry Unit, University of Oxford | sbcb.bioch.ox.ac.uk Reviews
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Structural Bioinformatics and Computational Biochemistry at the University of Oxford
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Structural Bioinformatics and Computational Biochemistry Unit, University of Oxford | sbcb.bioch.ox.ac.uk Reviews

https://sbcb.bioch.ox.ac.uk

Structural Bioinformatics and Computational Biochemistry at the University of Oxford

INTERNAL PAGES

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1

SBCB Unit: Image Gallery

http://sbcb.bioch.ox.ac.uk/images.php

1 of 4 Next.

2

Bendix

http://sbcb.bioch.ox.ac.uk/bendix

Bendix abstraction of Respiratory complex 1, rendered in Tachyon. Helix abstraction with heatmap colouring. RGB heatmap on MscS. Mhp1, custom uniform colourscheme. Atomistic representations, from left to right: All-atom, NewCartoon, Cartoon, Bendix. LacY by Bendix abstraction (left) and classic cartoon abstraction (right, in white). Bendix analysis of helix geometry evolution during a simulation. Update 8th January 2015: bendix now ships with VMD! The latest version of VMD. Bendix integrates with the res...

3

JGromacs - a Java package for analysing protein simulations

http://sbcb.bioch.ox.ac.uk/jgromacs

JGromacs is a Java library designed to facilitate the development of cross-platform analysis applications for Molecular Dynamics (MD) simulations. The package contains parsers for file formats applied by GROMACS. GROningen MAchine for Chemical Simulations), one of the most widely used MD simulation packages. JGromacs provides a multilevel object-oriented representation of simulation data to integrate and interconvert sequence, structure and dynamics information. In addititon, a basic analysis too...You c...

4

Structural Bioinformatics and Computational Biochemistry Unit, University of Oxford

http://sbcb.bioch.ox.ac.uk/index.php

Welcome to the Structural Bioinformatics and Computational Biochemistry Unit. We are interested in using computational methods to explore the relationship between structure and function in membrane proteins. This is important, as membrane proteins account for 25% of all genes, and play key roles in the physiology of cells. Indeed, membrane proteins are targets for 50% of drugs, and mutations in membrane proteins may result in diseases ranging from diabetes to cystic fibrosis. Sansom, M.S.P. Paper, open a...

5

CGDB

http://sbcb.bioch.ox.ac.uk/cgdb

Raquo; ENTER DATABASE. A Database of Inserted Membrane Proteins. Dr Peter J. Bond, Alan P. Chetwynd, Dr Kathryn A. Scott and Prof Mark S.P. Sansom. A recent model for semi-quantitative lipid simulations has been developed by SJ Marrink (see his website. Simulation package. We have adapted this model to allow the simulation of membrane proteins (as described in Bond and Sansom (2006), J. Am. Chem. Soc. In particular applied to the insertion of proteins into lipid bilayers or detergent micelles. This h...

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Conférenciers invités | GGMM2011

https://ggmm2011.wordpress.com/programme-2/conferenciers

Lundi 30 mai 2011 – mercredi 1er juin 2011 – La Rochelle. Aller au contenu principal. Monica Zoppè (en Anglais). Paul Emsley (en Anglais). Utilise les méthodes de la chimie théorique pour. Re-based olefin metathesis catalysts, Re(. CR)(=CHR)(X)(Y): the key role of X and Y ligands for efficient active sites. J Am Chem. Soc. 2005, 127, 14015-14025. Travaille sur la repré. Pour la création de vidéos époustouflantes. ( English text. Est Professeur à l’université d’Oxford et emploie de. Nombreuses techniques ...

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Ranjit Vijayan - About Me

http://www.ranjit.com/about.htm

Thanks for stopping by. On this page, I'll tell you a bit about myself. I was born in the year of the horse (according to the Chinese calendar). The following events occured that year:. Astronomer James Christy discovers Charon, the only known satellite of Pluto. The Solomon Islands and Dominica become independent from the United Kingdom. Argentina beat the Netherlands to win the football world cup. The Deer Hunter' wins the Best Picture Academy Award. 1901: Theodore Roosevelt becomes the 26. For the fir...

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Ranjit Vijayan - About Me

http://www.ranjit.org/about.htm

Thanks for stopping by. On this page, I'll tell you a bit about myself. I was born in the year of the horse (according to the Chinese calendar). The following events occured that year:. Astronomer James Christy discovers Charon, the only known satellite of Pluto. The Solomon Islands and Dominica become independent from the United Kingdom. Argentina beat the Netherlands to win the football world cup. The Deer Hunter' wins the Best Picture Academy Award. 1901: Theodore Roosevelt becomes the 26. For the fir...

mutationmapper.bioch.ox.ac.uk mutationmapper.bioch.ox.ac.uk

MutationMapper

http://mutationmapper.bioch.ox.ac.uk/about.php

Extract and Map Point Mutations. MutationMapper is maintained by the Structural Bioinformatics and Computational Biochemistry Unit at the Department of Biochemistry in the University of Oxford. Please let us know if you encounter any problems while using this service,or if you have any suggestions how we can improve our site. In case of concerns, questions or problems please contact Dr Philip Biggin. The project was developed by Oxford Centre for Integrative Systems Biology (OCISB). Oxford, OX1 3QU.

mutationmapper.bioch.ox.ac.uk mutationmapper.bioch.ox.ac.uk

MutationMapper

http://mutationmapper.bioch.ox.ac.uk/index.php

Extract and Map Point Mutations. Input can be a Uniprot Id, sequence or multiple sequence alignment in fasta format. The protein descriptor for the sequence should be a Uniprot Id or Accession Code. See help. Or, upload file. Please enter the characters. Or, upload Expression File. Structural Bioinformatics and Computational Biochemistry.

mutationmapper.bioch.ox.ac.uk mutationmapper.bioch.ox.ac.uk

MutationMapper

http://mutationmapper.bioch.ox.ac.uk/submit.php

Extract and Map Point Mutations. Structural Bioinformatics and Computational Biochemistry.

mutationmapper.bioch.ox.ac.uk mutationmapper.bioch.ox.ac.uk

MutationMapper

http://mutationmapper.bioch.ox.ac.uk/help.php

Extract and Map Point Mutations. Browse by Alignment position. Browse by Residue number. Browse by Pubmed Id. PTEN HUMAN (Single Sequence). Ionotropic Glutamate Receptor (Multiple Sequence Alignment). Example : GRKI1 RAT. Example : NMDZ1 RAT. Input can be a Uniprot Id, single sequence or multiple sequence alignment. It accepts one uniprot ID at a time and not a list of IDs. The first character of the description line should be a greater-than symbol:. Example: Uniprot ID or Accession Code. Q99572 - - - -...

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Structural Bioinformatics and Computational Biochemistry Unit, University of Oxford

Welcome to the Structural Bioinformatics and Computational Biochemistry Unit. We are interested in using computational methods to explore the relationship between structure and function in membrane proteins. This is important, as membrane proteins account for 25% of all genes, and play key roles in the physiology of cells. Indeed, membrane proteins are targets for 50% of drugs, and mutations in membrane proteins may result in diseases ranging from diabetes to cystic fibrosis. Sansom, M.S.P. Kalli, A.C.

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