etalog.blogspot.com
etalog: August 2012
http://etalog.blogspot.com/2012_08_01_archive.html
More of a comment than a question. Wednesday, August 15, 2012. Code Harvest: The Refactoring. Ive been hacking on bioinformatics code for four years now, but until now the only work Ive really made available to the community is in Biopython, mainly Bio.Phylo. The code I write in the lab is under one big Mercurial repository called esgb. Theres a shell script to install everything, including a bunch of scripts, sub-projects and a sprawling Python library called esbglib. Links to this post. With a folder f...
wiki.cnbc.cmu.edu
Code - The CNBC Wiki
http://wiki.cnbc.cmu.edu/Code
From The CNBC Wiki. Various bits of code that might help you run or analyze an experiment. Also see our Resources. Zip archive) is a random collection of routines written by Michael Tarr to work with PsychToolbox. The key routine is readdata which makes reading in text files somewhat less painful. Now includes an improved readdata routine (v 1.3). And as a zip file. Code and manual for: Armstrong, B. C., Watson, C. E., and Plaut, D. C. (2012) SOS! Zipped tar archive). I recommend putting these man pa...
numerics.kaust.edu.sa
KAUST Numerical Mathematics Group
http://numerics.kaust.edu.sa/software.html
The Numerical Mathematics Group. Software development is an integral part of our research. In order for new numerical algorithms to have impact, they must be implemented in software that is both easy to use and powerful enough to solve interesting problems. We believe in the principles of reproducibility. Including those outlined in the Science Code Manifesto. All codes used in our papers are released (under modified BSD license) and we encourage others to use them. Automatic generation of WENO kernels.
scienceinthesands.blogspot.com
Science in the Sands: October 2011
http://scienceinthesands.blogspot.com/2011_10_01_archive.html
Friday, October 28, 2011. Managing publication lists in HTML. As an academic, it's a good idea to maintain a professional website. With a list of your publications. 160;Ideally, this list should include links to where visitors can download the papers (PDFs) and any related code. 160;In my case, I also maintain a website for my research group. That has another publication list. Using the desktop app. It's also possible to get a bibtex file of your Mendeley publications directly on-line. My less-automatic...
scienceinthesands.blogspot.com
Science in the Sands: August 2012
http://scienceinthesands.blogspot.com/2012_08_01_archive.html
Tuesday, August 28, 2012. NodePy version 0.4 released. NodePy is a Python package for analyzing numerical integrators for initial value ODEs. It's essentially a collection of all the kinds of analysis I've used in my time integrator research, collected in a single object-oriented package. . If you have a new Runge-Kutta method and want to know all about it, NodePy can tell you most anything. If you want to design new time integration methods, NodePy can help you. That and much more. Links to this post.
numbers.brighterplanet.com
Company [Safety in Numbers]
http://numbers.brighterplanet.com/company.html
Middot; Contact us. Brighter Planet powers the leading computational sustainability platform, using hard numbers and raw data to reveal actionable opportunities and deliver measurable results to businesses and individuals worldwide. Our story and vision for the future of sustainability. Our staff, board of directors, and advisors. A list of our collaborators. Brighter Planet in the news and resources for the press. How we work with our clients. The backbone of Brighter Planet is our CM1. Brighter Planet'...
blog.impactstory.org
News Archives - Impactstory blog
http://blog.impactstory.org/category/news
Open science and research metrics news from the Impactstory team. Why researchers are loving the new Impactstory. We put our heart and soul into the new Impactstory and have been on pins and needles to hear what you think. Well it’s been a week and the verdict is in — we’re hearing that the new version is. 8211;an academic profile that’s. What do you like? A lot of users have appreciated that it now. To set up a profile that’s blazing fast and smooth to use: it’s. Instant insights about your research.
recomputation.org
Caveats on Being Free, and Licences | recomputation.org
http://www.recomputation.org/blog/2013/02/16/caveats-on-being-free
Skip to main content. If we can compute your experiment now, anyone can recompute it 20 years from now. Ian Gent's blog. Caveats on Being Free, and Licences. Caveats on Being Free, and Licences. Submitted by Ian Gent. On Sat, 02/16/2013 - 11:36. I have just posted the Guiding principles. One principle needs some elaboration:. Will always be free to those lodging bona-fide scientific experiments and to those obtaining past experiments, provided that. All aspects of the experiments are freely available,.
recomputation.com
Caveats on Being Free, and Licences | recomputation.org
http://www.recomputation.com/blog/2013/02/16/caveats-on-being-free
Skip to main content. If we can compute your experiment now, anyone can recompute it 20 years from now. Ian Gent's blog. Caveats on Being Free, and Licences. Caveats on Being Free, and Licences. Submitted by Ian Gent. On Sat, 02/16/2013 - 11:36. I have just posted the Guiding principles. One principle needs some elaboration:. Will always be free to those lodging bona-fide scientific experiments and to those obtaining past experiments, provided that. All aspects of the experiments are freely available,.
