scijava.org

SciJava

SciJava aims to provide an overview of available Java libraries for scientific computing. The packages listed are provided by individual projects each of which is committed to co-operating with the other projects, reusing libraries and integrating clients for a seamless workflow. The focus at the moment is geared towards image processing, having begun during the 2011 Fiji Hackathon. In Dresden, but other projects are welcome to get involved. Image visualization and annotation.

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SciJava | scijava.org Reviews

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SciJava aims to provide an overview of available Java libraries for scientific computing. The packages listed are provided by individual projects each of which is committed to co-operating with the other projects, reusing libraries and integrating clients for a seamless workflow. The focus at the moment is geared towards image processing, having begun during the 2011 Fiji Hackathon. In Dresden, but other projects are welcome to get involved. Image visualization and annotation.

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SciJava | scijava.org Reviews

https://scijava.org

SciJava aims to provide an overview of available Java libraries for scientific computing. The packages listed are provided by individual projects each of which is committed to co-operating with the other projects, reusing libraries and integrating clients for a seamless workflow. The focus at the moment is geared towards image processing, having begun during the 2011 Fiji Hackathon. In Dresden, but other projects are welcome to get involved. Image visualization and annotation.

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scijava.org

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ROI Specification Overview — ROI Specification [DRAFT] 0.0.1 documentation

http://www.scijava.org/roi-model

ROI Specification [DRAFT] 0.0.1 documentation. Enter search terms or a module, class or function name. The following are the requirements collected from meetings, online and offline discussion, email etc. Notes from the April 2012 meeting in Barcelona (. Comments on “fuzzy ROIs” from the April 2012 meeting in Barcelona (. ROI Specification [DRAFT] 0.0.1 documentation.

2

SciJava-common -- a generic Java framework for science

http://www.scijava.org/scijava-common/scijava-common.html

Plugins, contexts, utilities and more. Curtis Rueden and Johannes Koenig-Schindelin. Prelude: What is SciJava? Whether they call them extension points, plugins, modules, or toolboxes. Examples: KNIME nodes , ImageJ 1.x plugins. ImageJ 2 user interfaces. ImageJ 2 scripting languages. Trainable Segmentation feature algorithms. We invented a plugin mechanism to replace ImageJ 1.x. Plugins (called "commands" in ImageJ2 to distinguish from other plugins) . The same to Bio-Formats. Plugin types can be any.

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imagej.net

ImageJ2 - ImageJ

http://imagej.net/ImageJ2

Create the next generation of ImageJ, driven by the needs of the community. Work together across organizations, fostering open development through sharing and reuse. Make ImageJ useful and relevant across many disciplines of the scientific community. Preserve backwards compatibility with existing ImageJ functionality. Provide a central online resource for the ImageJ community. Drive ImageJ development forward with a clear vision. See also these presentation slides about ImageJ. Makes it simple to keep yo...

openpolscope.org

OpenPolScope: Software

http://www.openpolscope.org/pages/Overview_Software.htm

Discover the Order in Living Things. Software implements instrument control, image acquisition and processing algorithms for rapidly imaging. Optical anisotropies in three different modes:. Birefringence, polarized fluorescence, and diattenuation. Our software leverages popular open source, Java-based tools for biological microscopy, including ImageJ. This means that the software is 'agnostic' with respect to both operating systems and hardware devices/instrumentation. Several acquisition modes are avail...

openmicroscopy.org

Partner Projects — OME

http://www.openmicroscopy.org/site/products/partner

OME Model and Formats. Job Openings with OME. The OME Consortium includes laboratories in the UK, France, Italy, and the USA. Developers in a number of these laboratories are currently funded by a Wellcome Trust Strategic Award (see the OME Teams. Page for further details). As well as contributing to the core OME codebase and documentation, some of these labs are working on integrating additional functions and modules with OMERO:. Version 4.11.1 now available for OMERO 5.2 compatibility. Is a suite of MA...

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SciJava

SciJava aims to provide an overview of available Java libraries for scientific computing. The packages listed are provided by individual projects each of which is committed to co-operating with the other projects, reusing libraries and integrating clients for a seamless workflow. The focus at the moment is geared towards image processing, having begun during the 2011 Fiji Hackathon. In Dresden, but other projects are welcome to get involved. Image visualization and annotation.

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