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SCOPe: Structural Classification of Proteins — extended. Release 2.05

SCOPe: Structural Classification of Proteins — extended. Release 2.05

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SCOPe: Structural Classification of Proteins — extended. Release 2.05 | scop.berkeley.edu Reviews
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SCOPe: Structural Classification of Proteins — extended. Release 2.05 | scop.berkeley.edu Reviews

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SCOPe: Structural Classification of Proteins — extended. Release 2.05

INTERNAL PAGES

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1

SCOPe 2.05: Structural Classification of Proteins — extended

http://scop.berkeley.edu/help/ver=2.05

ASTRAL Sequences and Subsets. Parseable Files and Software. Structural Classification of Proteins — extended ( SCOPe. Is a database of protein structural relationships that extends the SCOP. Is a (mostly) manually curated ordering of domains from the majority of proteins of known structure in a hierarchy according to structural and evolutionary relationships. Development of SCOP. Version 1) concluded with SCOP. 175, released in June 2009. SCOPe. To include structures that can be classified in the SCOP.

2

SCOPe 2.06: Class e: Multi-domain proteins (alpha and beta)

http://scop.berkeley.edu/sunid=56572

ASTRAL Sequences and Subsets. Parseable Files and Software. Lineage for Class e: Multi-domain proteins (alpha and beta). Root: SCOPe 2.06. Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds). Contains a cluster of helices and a beta-sandwich. E2: Replication terminator protein (Tus). Contains a cluster of helices and a beta-sandwich. Contains a cluster of helices and an alpha beta sandwich. Contains an (8,10) beta-barrel and an all-alpha domain. E6: Acyl-CoA dehydrogenase NM domain-like.

3

SCOPe 2.05: Structural Classification of Proteins — extended

http://scop.berkeley.edu/astral/ver=2.05

ASTRAL Sequences and Subsets. Parseable Files and Software. Most commonly requested files. Genetic domain sequence subsets, based on PDB SEQRES. With less than 40% identity to each other: download sequences. Genetic domain sequence subsets, based on PDB SEQRES. With less than 95% identity to each other: download sequences. Domain sequences, ATOM. Domain sequences, SEQRES. Domain subsets, based on:. Domain sequences and subsets. Retrieve sequences for individual SCOPe. Chains (one at a time). Structural a...

4

SCOPe 2.06: Structural Classification of Proteins — extended

http://scop.berkeley.edu/astral

ASTRAL Sequences and Subsets. Parseable Files and Software. Most commonly requested files. Genetic domain sequence subsets, based on PDB SEQRES. With less than 40% identity to each other: download sequences. Genetic domain sequence subsets, based on PDB SEQRES. With less than 95% identity to each other: download sequences. Domain sequences, ATOM. Domain sequences, SEQRES. Domain subsets, based on:. Domain sequences and subsets. Retrieve sequences for individual SCOPe. Chains (one at a time). Structural a...

5

SCOPe 2.06: Structural Classification of Proteins — extended

http://scop.berkeley.edu/downloads

ASTRAL Sequences and Subsets. Parseable Files and Software. Version 2.01, data from all versions of SCOPe. Since 1.55 are stored in a relational database. To download a copy of the MySQL database released with stable SCOPe. 206 (sql.bz2 format), click here. Documentation for our schema is available here. ER diagrams were autogenerated using SchemaSpy. Note that we have removed the astral seq blast*. Tables from the download, since these tables are so large. They are available on request. Version 1.4,...

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strgen.org strgen.org

JMC's Research Page

http://www.strgen.org/~jmc

This is John-Marc Chandonia's research page. You can also visit my home page. Looking for something else? My main project is ENIGMA. Formerly Protein Complex Analysis Project. At Berkeley National Lab. I also lead development of the SCOPe. Databases, and contribute some work to KBase. I work closely with the Arkin Lab. I previously worked as a postdoc in the Cohen Group. At UCSF, and did my graduate studies with Martin Karplus. Structural Genomics, particularly target selection strategy. Testing the pote...

btisnet.gov.in btisnet.gov.in

BTISNet site

http://btisnet.gov.in/opendatabase.asp

Sub - Distributed Informtion Centres. R and D Projects. Establishment of Biotech Labs in Senior Secondary Schools (BLiSS) in North Eastern States of India. 27th Co-ordinators meeting to be held in Nainital from 3-5 March, 2016. National Symposium on Bioinformatics was held at University of Jammu on February 2, 2012. Compendium on Bioinformatics publications released during 23. The Biotechnology Information System Network is providing access to popular resources on Bioinformatics. EMBL-EBI is a centre for...

bioinformatics.oxfordjournals.org bioinformatics.oxfordjournals.org

GASS: identifying enzyme active sites with genetic algorithms

http://bioinformatics.oxfordjournals.org/cgi/content/full/btu746

View Current Issue (Volume 32 Issue 16 August 15, 2016). GASS: identifying enzyme active sites with genetic algorithms. Sandro C. Izidoro. Raquel C. de Melo-Minardi. Gisele L. Pappa. Advanced Campus at Itabira, Universidade Federal de Itajubá, Itajubá, MG 35903-087, Brazil and. Department of Computer Science and. Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Belo Horizonte, MG 31270-901, Brazil. To whom correspondence should be addressed. July 1, 2014. October 14, 2014.

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건국대학교 생명공학과 기능대사체 연구실

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Http:/ www.metabolomicssociety.org. The Koreaan Society of Microbiology and Biotechnology. Http:/ www.kormb.or.kr. Korean Society for Mass Spectrometry. Http:/ www.ksms.org. Korean Society for biochemistry and Molecular Biology. Http:/ www.biochem.or.kr. Http:/ pubchem.ncbi.nlm.nih.gov. CAS (A division of the American Chemical Society). Http:/ www.cas.org. CCD (The Combined Chemical Dictionary). Http:/ ccd.chemnetbase.com. Http:/ www.chemindustry.com/. Http:/ chemdb.kisti.re.kr. Http:/ www.gdb.org. GEM (...

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BTISNet site

http://btisnet.nic.in/opendatabase.asp

Sub - Distributed Informtion Centres. R and D Projects. Establishment of Biotech Labs in Senior Secondary Schools (BLiSS) in North Eastern States of India. 27th Co-ordinators meeting to be held in Nainital from 3-5 March, 2016. National Symposium on Bioinformatics was held at University of Jammu on February 2, 2012. Compendium on Bioinformatics publications released during 23. The Biotechnology Information System Network is providing access to popular resources on Bioinformatics. EMBL-EBI is a centre for...

scop.protres.ru scop.protres.ru

SCOP: Help

http://scop.protres.ru/mirrors.html

Structural Classification of Proteins. Home Server in Cambridge. University of California, Berkeley. National Tsing Hua University. National University of Singapore. Institute of Protein Research RAS. Indian Institute of Science, Bangalore. Each of the mirror sites carries out its own scientific role, and generously provides access to SCOP. As a public service. We are grateful to the institutions and people that maintain these sites for allowing us to make SCOP.

openbioinformatics.blogspot.com openbioinformatics.blogspot.com

Protein Sequence and Structure Bioinformatics: May 2012

http://openbioinformatics.blogspot.com/2012_05_01_archive.html

Protein Sequence and Structure Bioinformatics. Monday, May 21, 2012. BioJava 3.0.4 released. BioJava 3.0.4 just hit the servers. This is mainly a bug-fix release addressing a few issues with the protein structure and the disorder modules. One new feature is that SCOP can now be either accessed from the original SCOP site in the UK. Or the Berkeley version. Posted by Andreas Prlic. Links to this post. Wednesday, May 9, 2012. About Pfam and PDB mappings. Posted by Andreas Prlic. Links to this post. To thos...

tbi.tw tbi.tw

::TBI Core Facility::

http://www.tbi.tw/webres/index.htm

Structure and gene expression databases. National Center for Toxicology Research, FDA, USA. Bioinformatics Resources in Taiwan. Academia Sinica Life Science Library,. National Research Program for Genomic Medicine,. Bioinformatics Society Taiwan,. National Cheng Kung University. NCKU Bioinformatics Center,. NCTU Department of Biological Science and Technology. National Center for High Performance Computing. National Health Research Institutes. NHRI Bioinformatics Services,. NYMU Genome Research Center,.

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SCOPe: Structural Classification of Proteins — extended. Release 2.05

SCOPe: Structural Classification of Proteins — extended. Release 2.05 (February 2015, new entries added 2015-08-06). Click for information about changes to SCOP(e) design and size. Is a database developed at the Berkeley Lab and UC Berkeley to extend the development and maintenance of SCOP. Was conceived at the MRC Laboratory of Molecular Biology, and developed in collaboration with researchers in Berkeley. Version 1) concluded in June 2009 with the release of SCOP. Entries were last added on 2015-08-06.

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SCOP - Saskatchewan College of Podiatrists

Po⋅di⋅a⋅try n. the care of the human foot, esp. the diagnosis and treatment of foot disorders. Saskatchewan College of Podiatrists. Po⋅di⋅a⋅try n. the care of the human foot, esp. the diagnosis and treatment of foot disorders. Saskatchewan College of Podiatrists. Po⋅di⋅a⋅try n. the care of the human foot, esp. the diagnosis and treatment of foot disorders. Po⋅di⋅a⋅try n. the care of the human foot, esp. the diagnosis and treatment of foot disorders. We are the Saskatchewan College of Podiatrists.

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