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SCOP: Structural Classification of Proteins

Structural Classification of Proteins. Structural Classification of Proteins. 38221 PDB Entries. 1 Literature Reference. 110800 Domains. (excluding nucleic acids and theoretical models). Folds, superfamilies, and families statistics here. List of obsolete entries and their replacements. Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP. A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540. [ PDF. Structural alignment...

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SCOP: Structural Classification of Proteins | scop.life.nthu.edu.tw Reviews
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Structural Classification of Proteins. Structural Classification of Proteins. 38221 PDB Entries. 1 Literature Reference. 110800 Domains. (excluding nucleic acids and theoretical models). Folds, superfamilies, and families statistics here. List of obsolete entries and their replacements. Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP. A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540. [ PDF. Structural alignment...
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SCOP: Structural Classification of Proteins | scop.life.nthu.edu.tw Reviews

https://scop.life.nthu.edu.tw

Structural Classification of Proteins. Structural Classification of Proteins. 38221 PDB Entries. 1 Literature Reference. 110800 Domains. (excluding nucleic acids and theoretical models). Folds, superfamilies, and families statistics here. List of obsolete entries and their replacements. Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP. A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540. [ PDF. Structural alignment...

INTERNAL PAGES

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1

SCOP: Root: scop

http://scop.life.nthu.edu.tw/data/scop.b.html

Structural Classification of Proteins. Alpha and beta proteins (a/b). Mainly parallel beta sheets (beta-alpha-beta units). Alpha and beta proteins (a b). Mainly antiparallel beta sheets (segregated alpha and beta regions). Multi-domain proteins (alpha and beta). Folds consisting of two or more domains belonging to different classes. Membrane and cell surface proteins and peptides. Does not include proteins in the immune system. Usually dominated by metal ligand, heme, and/or disulfide bridges.

2

List of Classification Articles

http://scop.life.nthu.edu.tw/refs.html

Structural Classification of Proteins. References on the Principles Governing Protein Folds and Their Classification. Articles listed here are mainly concerned with principles that govern secondary structure associations and chain topology, and the use of these principles to classify protein structures. Papers on methods for detecting structural similarities are reviewed in Orengo (1994). And Holm and Sander (1994). Articles are organized in sections. On the classification of proteins: introductory texts.

3

Glossary of terms

http://scop.life.nthu.edu.tw/gloss.html

Structural Classification of Proteins. Glossary of terms used in the brief descriptions of protein folds. In this version of scop we give short descriptions of the protein folds in the all-alpha, all-beta, and alpha/beta classes. Preliminary descriptions are also given for some of the folds in other classes: in later versions these will be refined and extended to folds without descriptions at present. Is a simple topology of a beta-sheet where any two consecutive strands are adjacent and antiparallel.

4

SCOP: Help

http://scop.life.nthu.edu.tw/count.html

Structural Classification of Proteins. Structural Classification of Proteins. 1.75. 38221 PDB Entries (23 Feb 2009). 110800 Domains. 1 Literature Reference. Excluding nucleic acids and theoretical models). Alpha and beta proteins (a/b). Alpha and beta proteins (a b). Membrane and cell surface proteins. Structural Classification of Proteins. 1.73. 34494 PDB Entries (26 Sep 2007). 97178 Domains. 1 Literature Reference. Excluding nucleic acids and theoretical models). Alpha and beta proteins (a/b). 20619 PD...

5

SCOP: Introduction

http://scop.life.nthu.edu.tw/intro.html

Structural Classification of Proteins. Introduction to Structural Classification of Proteins. Alexey G. Murzin, Steven E. Brenner, Tim J. P. Hubbard, and Cyrus Chothia. MRC Laboratory of Molecular Biology and Centre for Protein Engineering. Hills Road, Cambridge CB2 2QH, England. Scop@mrc-lmb.cam.ac.uk. It is available as a set of tightly linked hypertext documents which make the large database comprehensible and accessible. In addition, the hypertext pages offer a panoply of representations of prote...

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清華大學生物資訊中心Bioinformatics Center, NTHU

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Value-added databases and analysis server. Tructural Classification of Proteins ( Origin Site. June 2009). 38221 PDB Entries. 1 Literature Reference. 110800 Domains. (excluding nucleic acids and theoretical models). He Predict Protein server in NTHU. PredictProtein is a service for sequence analysis, and structure prediction. You submit any protein sequence. PredictProtein retrieves similar sequences in the database and predicts aspects of protein structure. LAST against PDB protein databank in NTHU.

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清華大學生物資訊中心Bioinformatics Center, NTHU

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Value-added databases and analysis server. Omparative modeling predicts the three-dimensional structure of a given protein sequence (target) based primarily on its alignment to one or more proteins of known structure (templates). The prediction process consists of fold assignment, target template alignment, model building, and model evaluation. [More]. Modeling and Prediction Links. Ow to get PDB file. Databases for Protein Structure. Atom in PDB file. Tutorial for the rasmol. How to build the chime page.

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SCOP: Help

http://scop.protres.ru/mirrors.html

Structural Classification of Proteins. Home Server in Cambridge. University of California, Berkeley. National Tsing Hua University. National University of Singapore. Institute of Protein Research RAS. Indian Institute of Science, Bangalore. Each of the mirror sites carries out its own scientific role, and generously provides access to SCOP. As a public service. We are grateful to the institutions and people that maintain these sites for allowing us to make SCOP.

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SCOP: Structural Classification of Proteins

Structural Classification of Proteins. Structural Classification of Proteins. 38221 PDB Entries. 1 Literature Reference. 110800 Domains. (excluding nucleic acids and theoretical models). Folds, superfamilies, and families statistics here. List of obsolete entries and their replacements. Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP. A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540. [ PDF. Structural alignment...

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