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The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the release notes. Next-Generation Sequencing Analysis on the Grid and in the Cloud. 8221; and the ” Introduction to SeqWare. 8221; documents for more details. The ” Documentation. 8221; pages show how to install and use SeqWare. In particular, we recommend new users begin with the three getting started guide found in the documentation section and linked to below. Developers can reach the GitHub site ” here.

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The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the release notes. Next-Generation Sequencing Analysis on the Grid and in the Cloud. 8221; and the ” Introduction to SeqWare. 8221; documents for more details. The ” Documentation. 8221; pages show how to install and use SeqWare. In particular, we recommend new users begin with the three getting started guide found in the documentation section and linked to below. Developers can reach the GitHub site ” here.

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SeqWare » Home | seqware.github.io Reviews

https://seqware.github.io

The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the release notes. Next-Generation Sequencing Analysis on the Grid and in the Cloud. 8221; and the ” Introduction to SeqWare. 8221; documents for more details. The ” Documentation. 8221; pages show how to install and use SeqWare. In particular, we recommend new users begin with the three getting started guide found in the documentation section and linked to below. Developers can reach the GitHub site ” here.

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seqware.github.io

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SeqWare › About

http://seqware.github.io/about

The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the release notes. SeqWare currently provides 5 main tools specifically designed to support massively parallel sequencing technologies. All tools can be used together or separately:. Provides a common database to store metadata used by all components. A LIMS-like web application to manage samples, record computational events, and present results back to end users. Please cite the SeqWare paper:.

2

SeqWare › Documentation

http://seqware.github.io/docs

We recommend you follow the guides in the following order: User, Developer, then Admin guides. SeqWare currently provides 5 main tools specifically designed to support the analysis necessary for massively parallel sequencing technologies. All tools can be used together or separately. The tutorials below will focus mainly on Pipeline with information about other projects provided as needed:. Provides a common database to store metadata used by all components. An admin of the system, this is typically both...

3

SeqWare › Introduction to SeqWare

http://seqware.github.io/docs/1-introduction

Why not use SeqWare? How to use SeqWare? SeqWare is an open-source bioinformatics workflow deployment and management system. Its core features include:. A centralized metadata database that tracks samples, annotations and analyses, along with a web application to visualize it. A workflow bundle specification and execution engine that lets you package computational tools and use them to build and run complex analytical workflows. Why not use SeqWare? You would not want to use SeqWare if you have a small n...

4

SeqWare › Community

http://seqware.github.io/community

The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the release notes. We are currently transitioning off of SourceForge to GitHub and other services. This is a pretty big task since we have years of content in our current wiki, multiple bug tracking systems, and two mailing lists. Please bear with us while we make this migration. In the mean time you can find our subversion repository and current wiki on SourceForge, see:. The SourceForge developers site. The SourceForge wiki page.

5

SeqWare › User Tutorial

http://seqware.github.io/docs/3-getting-started/user-tutorial

By the End of This Tutorial. The SeqWare Command Line Interface. The SeqWare Settings File. Creating Studies, Experiments, and Samples. Listing Available Workflows and Their Parameters. Scheduling a Workflow Run and Monitoring Progress. The Resulting Structure in MetaDB. How to Cancel Workflows. How to Retry Failed and Cancelled Workflows. By the End of This Tutorial. Use command line tools from Pipeline as a workflow user. Create studies, experiments, and samples in the MetaDB. Make sure that you launch...

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seqware.github.io

SeqWare » Home

The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the release notes. Next-Generation Sequencing Analysis on the Grid and in the Cloud. 8221; and the ” Introduction to SeqWare. 8221; documents for more details. The ” Documentation. 8221; pages show how to install and use SeqWare. In particular, we recommend new users begin with the three getting started guide found in the documentation section and linked to below. Developers can reach the GitHub site ” here.

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