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HomeMolecular Genetics toolkit for functional analysis of DNA Microarrays and RNAseq data analysis
http://server.molgenrug.nl/
Molecular Genetics toolkit for functional analysis of DNA Microarrays and RNAseq data analysis
http://server.molgenrug.nl/
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Molecular Genetics toolkit for functional analysis of DNA Microarrays and RNAseq data analysis
server.molgenrug.nl
Conversions
http://server.molgenrug.nl/index.php/conversions
Locus tag Old - New. GPR to Signal Table. This page will help you to convert your DNA, Protein or text format. Paste your data in text box below:. Tab delimited - FASTA. FASTA format - Tab delimited. FASTA DNA - FASTA protein. Genbank - FASTA DNA. Genbank - Genes (FASTA). Genbank - Proteins (FASTA). Invcompl. per line in DNA list. Clean up your sequence. Remove duplicate entries in FASTA. Reverse sequences in list of sequences. Text - remove replicate lines. Text - join list to 1 line using as separator.
DNA motifs
http://server.molgenrug.nl/index.php/dna-motifsg2d
Locus tag Old - New. GPR to Signal Table. No active genome yet, please select one from the list No genome set yet, this can be done in the main menu; click here.
GSEA_Pro
http://server.molgenrug.nl/index.php/functional-analysis-go-ipr
Locus tag Old - New. GPR to Signal Table. Functional analysis of groups of genes using Gene Set Enrichment Analysis (GSEA). Of GO, InterPro, KEGG, PANTHER, PFAM and Superfamily classes. No active genome yet, please select one from the list Change active genome here. This Gene Set Enrichment Analysis. Will find overrepresented classes in a list of locus tags, using a hyper-geometric distribution test. Thw following three methods are supported in GSEA PRO. OR paste data below.
Protein to DNA
http://server.molgenrug.nl/index.php/protein-2-dna
Locus tag Old - New. GPR to Signal Table. No active genome yet, please select one from the list No genome set yet, this can be done in the main menu; click here.
T-REx
http://server.molgenrug.nl/index.php/rnaseq-expression-analysis
Locus tag Old - New. GPR to Signal Table. T-REx - RNA-seq expression analysis. T-REx: Transcriptome analysis webserver for RNA-seq Expression data. Cite: de Jong, Anne, et al. BMC Genomics 16.1 (2015): 663]. RNA-seq analysis pipeline allows one to do statistics on gene count values such as RPKM, FPKM or sequencing depth counts. A part of this pipeline is based on EdgeR: 'differential expression analysis of digital gene expression data' - reference -. This pipeline in 100% parameter free. Table with all g...
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People
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Today Aug 30 2016 Molgen has 66 groupmembers. Marielle van den Esker. Sjoerd van der Meulen. ProfDr. Oscar Kuipers. Genome and transcriptome analyses of G -bacteria, specificially L.Lactis, B.subtilis and S.pneumoniae. ProfDr. Jan Kok. Molecular genetic and genomic analyses of the Gram-positive bacteria Lactococcus lactis. ProfDr. Jan Willem Veening. ProfDr. Gert Moll. Honorary professor Protein Modification and Functionality. Dr Angel Alegria Gonzalez. Competence in Strep.pneumoniae. Dr Anne de Jong.
Articles
http://www.molgenrug.nl/index.php/articles
Time series B.sub. A mobile genetic element profoundly increases heat resistance of bacterial spores. Berendsen EM; Boekhorst J; Kuipers OP; Wells-Bennik MH. ISME J 2016 ;0(0):0-0. No pdf for mg0892. Draft Genome Sequences of 10 Bacillus subtilis Strains That Form Spores with High or Low Heat Resistance. Berendsen EM; Wells-Bennik MH; Krawczyk AO; de Jong A; van Heel A; Eijlander RT; Kuipers OP. Genome Announc 2016 ;4(2):0-0. No pdf for mg0895. Genome Announc 2016 ;4(3):0-0. No pdf for mg0889. No pdf for...
MolGen News
http://www.molgenrug.nl/index.php/molgen-news
Thesis defence Auke van Heel. PhD ceremony: Auke van Heel. 14:30 uur, Academiegebouw, Broerstraat 5, Groningen. Dissertation: Prediction, production and characterization of post-translationally modified antimicrobial peptide. Promotor: prof.dr. O.P.Kuipers. Faculty: Mathematics and Natural Sciences. Thesis defence Liang Zhou. PhD ceremony: Liang Zhou. 14:30 uur, Academiegebouw, Broerstraat 5, Groningen. Dissertation: Bioengineering of the lantibiotic nisin to create new antimicrobial functionalities.
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Genome2D webserver for analysis and visualization of bacterial genomes and transcriptome data. By Anne de Jong. Molecular Genetics, Linnaeusborg 7, University of Groningen. Commonly used operations such as reformatting DNA and Proteins files, aligining tables, getting multiple DNA fragments, retrieve annoations of gene lists etc. can be found in the Main menu and the Toolbox. Lactococcus lactis, Bacillus subtilis, Streptococcus pneumoniae, Bacillus cereus.
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