skuld.bmsc.washington.edu

Merritt Lab - University of Washington Biomolecular Structure Center

At the University of Washington. Inference of TLS motion from refined structures. Analysis/validation of structures refined using TLS or other models of anisotropy. PRediction of Outcome using Sequence and Protein Experimental Results Online. Automated data-fitting for Thermal Shift Assays. Program suite for photorealistic molecular graphics. Database, Tutorial, MAD Phasing. Mirrored from www.bmsc.washington.edu. And personal web pages. Website queries to merritt@u.washington.edu.

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Merritt Lab - University of Washington Biomolecular Structure Center | skuld.bmsc.washington.edu Reviews

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At the University of Washington. Inference of TLS motion from refined structures. Analysis/validation of structures refined using TLS or other models of anisotropy. PRediction of Outcome using Sequence and Protein Experimental Results Online. Automated data-fitting for Thermal Shift Assays. Program suite for photorealistic molecular graphics. Database, Tutorial, MAD Phasing. Mirrored from www.bmsc.washington.edu. And personal web pages. Website queries to merritt@u.washington.edu.

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2 biomolecular structure center

3 web services

4 merritt lab

5 tlsmd

6 parvati

7 prospero

8 raster3d

9 x ray anomalous scattering

10 crystalinks

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Merritt Lab - University of Washington Biomolecular Structure Center | skuld.bmsc.washington.edu Reviews

https://skuld.bmsc.washington.edu

At the University of Washington. Inference of TLS motion from refined structures. Analysis/validation of structures refined using TLS or other models of anisotropy. PRediction of Outcome using Sequence and Protein Experimental Results Online. Automated data-fitting for Thermal Shift Assays. Program suite for photorealistic molecular graphics. Database, Tutorial, MAD Phasing. Mirrored from www.bmsc.washington.edu. And personal web pages. Website queries to merritt@u.washington.edu.

INTERNAL PAGES

skuld.bmsc.washington.edu

1

X-ray Anomalous Scattering

http://skuld.bmsc.washington.edu/scatter/AS_index.html

This document is intended to serve both as an introductory tutorial to anomalous scattering and as a general tool for designing experiments based on anomalous scattering. While primarily intended for crystallographers considering MAD data collection, it may also be of some help in planning experiments using spectroscopy (XAFS, DAFS) or small-angle scattering. Interface to X-ray absorption edge tabulations. Chart of Absorption Edges. Generate plot of theoretical f' and f" for any element.

2

Raster3D (photorealistic molecular graphics)

http://skuld.bmsc.washington.edu/raster3d/raster3d.html

Raster3D Version 3.0. Raster3D 3.0-3.tar.gz. RPM packages for linux. Raster3D 2.9-2.tar.gz. In glorious 3D with highlights, shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel. The current version is 3.0 (last changed: 29-Mar-2014). New in this version:. Dynamic array allocation (no need to recompiler for big structures). Labels are processed directly by the render program; no need to render labels separately using PostScript. For Version 3.0-3. Raster3D-3.0-2&#...

3

PARVATI - Protein Anisotropic Refinement Validation and Analysis

http://skuld.bmsc.washington.edu/parvati/parvati.html

Protein Anisotropic Refinement Validation and Analysis Tool. Upload local PDB or mmCIF file:. Pull from PDB by accession code:. Label to place on plots:. Please send problems or suggestions to merritt@u.washington.edu. Survey of anisotropy in. Applying restraints to change. The distribution of anisotropy. Ethan A Merritt 1998-2012 / merritt@u.washington.edu / Biomolecular Structure Center at UW.

4

FIT for DSF & SEC

http://skuld.bmsc.washington.edu/FIT

And Size Exclusion Chromatograms. Fit Differential Scanning Fluorimetry (T. The tm calc.pl. Script and run it on your machine,. Or use the script on this server: upload or paste. A comma-separated values (.csv) file exported from an Opticon Monitor RT-PCR machine,. A csv exported from one of SGC's Transform. Spreadsheets for ABI, Agilent or Biorad machines,. A csv converted from Opticon Monitor's binary .tad or .tad2 files using tad2csv.pl. Or other delimited column formats.

5

TLS Motion Determination Home

http://skuld.bmsc.washington.edu/~tlsmd

TLS Motion Determination Home. Start a New Job. TLS Motion Determination (TLSMD). Analyzes a macromolecular crystal structure for evidence of flexibility, e.g. local or inter-domain motions. It does this by partitioning individual chains into multiple segments that are modeled as rigid bodies undergoing TLS (Translation/Libration/Screw) vibrational motion. It generates all possible partitions up to a maximum number of segments. Each trial partition is scored by how well it explains th...About TLS groups,...

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skuld.bmsc.washington.edu

Merritt Lab - University of Washington Biomolecular Structure Center

At the University of Washington. Inference of TLS motion from refined structures. Analysis/validation of structures refined using TLS or other models of anisotropy. PRediction of Outcome using Sequence and Protein Experimental Results Online. Automated data-fitting for Thermal Shift Assays. Program suite for photorealistic molecular graphics. Database, Tutorial, MAD Phasing. Mirrored from www.bmsc.washington.edu. And personal web pages. Website queries to merritt@u.washington.edu.

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