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SLIP and SLIDE

User’s guide: SLIDE. User’s guide: SLIP. Rapid multiple hypothesis testing correction (SLIDE) and power estimation (SLIP). SLIDE ( Sliding-window method for Locally Inter-correlated markers with asymptotic Distribution Errors corrected. Is a multivariate normal distribution (MVN)-based multiple hypothesis testing correction method. SLIDE shows a near identical accuracy to the gold standard, the permutation test, and is much faster. SLIDE (Linux compatible, 32 bit) slide.1.0.4.tar.gz. Buhm Han, Hyun Min K...

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SLIP and SLIDE | slide.cs.ucla.edu Reviews

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User’s guide: SLIDE. User’s guide: SLIP. Rapid multiple hypothesis testing correction (SLIDE) and power estimation (SLIP). SLIDE ( Sliding-window method for Locally Inter-correlated markers with asymptotic Distribution Errors corrected. Is a multivariate normal distribution (MVN)-based multiple hypothesis testing correction method. SLIDE shows a near identical accuracy to the gold standard, the permutation test, and is much faster. SLIDE (Linux compatible, 32 bit) slide.1.0.4.tar.gz. Buhm Han, Hyun Min K...

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SLIP and SLIDE | slide.cs.ucla.edu Reviews

https://slide.cs.ucla.edu

User’s guide: SLIDE. User’s guide: SLIP. Rapid multiple hypothesis testing correction (SLIDE) and power estimation (SLIP). SLIDE ( Sliding-window method for Locally Inter-correlated markers with asymptotic Distribution Errors corrected. Is a multivariate normal distribution (MVN)-based multiple hypothesis testing correction method. SLIDE shows a near identical accuracy to the gold standard, the permutation test, and is much faster. SLIDE (Linux compatible, 32 bit) slide.1.0.4.tar.gz. Buhm Han, Hyun Min K...

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slide.cs.ucla.edu

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User’s guide: SLIDE

http://slide.cs.ucla.edu/guide_slide.html

User’s guide: SLIDE. User’s guide: SLIP. User’s guide: SLIDE. The basic input file is a white-space-delimitered matrix where 0/1/2 denotes the number of one of two alleles. The rows are SNPs and the columns are individuals (controls first, and then cases). Genotype data or haplotype data can be used. Any lines starting with “#” are considred comments in all input files. Another possible input file format is the covariance band-matrix. Let. Be the covariance between the statistic at marker. Previous studi...

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SLIP and SLIDE

http://slide.cs.ucla.edu/index.html

User’s guide: SLIDE. User’s guide: SLIP. Rapid multiple hypothesis testing correction (SLIDE) and power estimation (SLIP). SLIDE ( Sliding-window method for Locally Inter-correlated markers with asymptotic Distribution Errors corrected. Is a multivariate normal distribution (MVN)-based multiple hypothesis testing correction method. SLIDE shows a near identical accuracy to the gold standard, the permutation test, and is much faster. SLIDE (Linux compatible, 32 bit) slide.1.0.4.tar.gz. Buhm Han, Hyun Min K...

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User’s guide: SLIP

http://slide.cs.ucla.edu/guide_slip.html

User’s guide: SLIDE. User’s guide: SLIP. User’s guide: SLIP. SLIP requires four input files. 1 Phased reference data file. Reference data file is a space-delimitered matrix of 0/1 (0 for major and 1 for minor allele). The allele coded as ‘1’ (minor allele) will be considered the disease allele. The rows are SNPs and the columns are haplotypes. Any lines starting with “#” are considred comments in all input files. 2 Causal SNP file. Possibly after removing too much rare SNPs given a MAF threshold). This f...

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zarlab.cs.ucla.edu

Software – ZarLab

http://zarlab.cs.ucla.edu/software

Our group developed several software packages that are actively supported:. Read origin protocol (ROP). Is a computational protocol aimed to discover the source of all reads. The ‘dumpster diving’ profile of unmapped reads may be applied to whole-exome and whole-genome sequencing. Serghei [at] cs [dot] ucla [dot] edu. Https:/ sergheimangul.wordpress.com/rop/. Dumpster diving in RNA-seq to find the source of every last read. CAusal Variants Identication in Associated Regions (CAVIAR). Sliding-window metho...

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SLIP and SLIDE

User’s guide: SLIDE. User’s guide: SLIP. Rapid multiple hypothesis testing correction (SLIDE) and power estimation (SLIP). SLIDE ( Sliding-window method for Locally Inter-correlated markers with asymptotic Distribution Errors corrected. Is a multivariate normal distribution (MVN)-based multiple hypothesis testing correction method. SLIDE shows a near identical accuracy to the gold standard, the permutation test, and is much faster. SLIDE (Linux compatible, 32 bit) slide.1.0.4.tar.gz. Buhm Han, Hyun Min K...

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