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Welcome to Carlos J Camacho's Lab — SmoothDock

Only in current section. Welcome to Carlos J Camacho's Lab. Intrinsic protein disorder has been found in many proteins. However, its origin has not been well understood. Our genome-wide survey indicates that the distribution of disorder depends strongly on protein function, and a first principles thermodynamic analysis explains the nature of this relationship. ( more. Using thermodynamic modeling and MD simulations, this work provides a framework for understanding the relative capacity of inherently unst...

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Welcome to Carlos J Camacho's Lab — SmoothDock | smoothdock.ccbb.pitt.edu Reviews

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Only in current section. Welcome to Carlos J Camacho's Lab. Intrinsic protein disorder has been found in many proteins. However, its origin has not been well understood. Our genome-wide survey indicates that the distribution of disorder depends strongly on protein function, and a first principles thermodynamic analysis explains the nature of this relationship. ( more. Using thermodynamic modeling and MD simulations, this work provides a framework for understanding the relative capacity of inherently unst...

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Welcome to Carlos J Camacho's Lab — SmoothDock | smoothdock.ccbb.pitt.edu Reviews

https://smoothdock.ccbb.pitt.edu

Only in current section. Welcome to Carlos J Camacho's Lab. Intrinsic protein disorder has been found in many proteins. However, its origin has not been well understood. Our genome-wide survey indicates that the distribution of disorder depends strongly on protein function, and a first principles thermodynamic analysis explains the nature of this relationship. ( more. Using thermodynamic modeling and MD simulations, this work provides a framework for understanding the relative capacity of inherently unst...

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SmoothDock

http://smoothdock.ccbb.pitt.edu/sitemap

Only in current section. An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. SmoothDock and this website are. 2003-2016 by the Department of Computational Biology, University of Pittsburgh.

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Publications — SmoothDock

http://smoothdock.ccbb.pitt.edu/publications

Only in current section. T Travers, H. Shao, B. A. Joughin, D. A. Lauffenburger, A. Wells, C. J. Camacho, Tandem phosphorylation within an intrinsically disordered region regulates ACTN4 function. Shao H, Travers T, Camacho CJ, Wells A. The carboxyl tail of alpha-actinin-4. Regulates its susceptibility to m-calpain and thus functions in cell migration. And spreading. Int J Biochem Cell Biol. 2013 Jun;45(6):1051-63. Epub 2013 Mar 1. (PMID: 23466492. 5;104(3):705-15. (PMID: 23442921. N, Matsuzaki Y, Ishida...

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Congratulations to Matthew Baumgartner for being named the CSB 2015 Student of the Year — SmoothDock

http://smoothdock.ccbb.pitt.edu/news/congratulations-to-matthew-baumgartner-for-being-awarded-the-2015-student-of-the-year

Only in current section. Congratulations to Matthew Baumgartner for being named the CSB 2015 Student of the Year. Congratulations to Matthew Baumgartner for being named the CSB 2015 Student of the Year. Congratulations to Matthew Baumgartner for being named the CSB 2015 Student of the Year. SmoothDock and this website are. 2003-2016 by the Department of Computational Biology, University of Pittsburgh.

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Welcome to Carlos J Camacho's Lab — SmoothDock

http://smoothdock.ccbb.pitt.edu/copy_of_front-page/sendto_form

Only in current section. Send this page to someone. Fill in the email address of your friend, and we will send an email that contains a link to this page. The e-mail address to send this link to. A comment about this link. Congratulations to Matthew Baumgartner for being named the CSB 2015 Student of the Year May 20, 2015. SmoothDock and this website are. 2003-2016 by the Department of Computational Biology, University of Pittsburgh.

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Pharmer: Open-Source Software for Efficient and Exact Pharmacophore Search

http://smoothdock.ccbb.pitt.edu/pharmer

Efficient and Exact Pharmacophore Search. A pharmacophore for Heat Shock Protein 90. Pharmer recovers 11 active compounds from a 1.8 million conformer library generated from the MUV. HSP90 dataset in about 30 seconds. Pharmer is a pharmacophore. Search technology that can search millions of chemical structures in seconds. Unlike other technologies, the performance of Pharmer scales with the complexity of the query, not the size of the library being searched. Pharmer was developed by David Koes.

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Institute for Physical Sciences and Technology, Building 085. College Park, MD 20742. Phone: 301.405.4803. Fax: 301.314.9404. Any complaints or random comments are encouraged to be addressed here. Helpful suggestions are to be directed here. The old webpage can still be found here. Jump to: [ Postdoctoral Researchers. BS, Chemistry, 1977. Indian Institute of Technology (Kanpur, India). PhD, Chemistry, 1982. Diploma, Physics, 2000. Moscow State University (Moscow, Russia). PhD, Chemistry, 2004. Http:/ bio...

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Joseph C. Ayoob | Computational & Systems Biology

http://www.csb.pitt.edu/people/faculty/joseph-c-ayoob

Computational and Systems Biology. Computational Biology Ph.D. TECBio REU @ Pitt. Joseph C. Ayoob. James R. Faeder. Robin E. C. Lee. Daniel M. Zuckerman. Molecular Biophysics Structural Biology. Microbiology & Molecular Genetics. Joseph C. Ayoob. Joseph C. Ayoob, Ph.D. PhD, Neuroscience, Johns Hopkins University School of Medicine; B.A. Biology, University of Pennsylvania. 3053 Biomedical Science Tower 3. Pittsburgh, PA 15213Phone: (412) 648-8646. Chennubhotla C (2012) First Steps. Chak K, Andreone BJ, O...

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Education | Computational & Systems Biology

http://www.csb.pitt.edu/education-2

Computational and Systems Biology. Computational Biology Ph.D. TECBio REU @ Pitt. Joseph C. Ayoob. James R. Faeder. Robin E. C. Lee. Daniel M. Zuckerman. Molecular Biophysics Structural Biology. Microbiology & Molecular Genetics. Arnegie Mellon University of P. Iology (CPCB) Graduate Program. Ndergraduates (REU) Summer Program. DiSCoBio) UPCI Summer Academy. Department of Computational and Systems Biology 3501 Fifth Avenue, 3064 BST3, Pittsburgh, PA 15260 p: (412) 648-3333 f: (412) 648-3163.

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Ivet Bahar (Chair) | Computational & Systems Biology

http://www.csb.pitt.edu/people/faculty/ivet-bahar

Computational and Systems Biology. Computational Biology Ph.D. TECBio REU @ Pitt. Joseph C. Ayoob. James R. Faeder. Robin E. C. Lee. Daniel M. Zuckerman. Molecular Biophysics Structural Biology. Microbiology & Molecular Genetics. Ivet Bahar, Ph.D. Distinguished Professor and John K. Vries Chair. PhD in Chemistry, Istanbul Technical Institute; B.S. and M.S. in Chemical Engineering, Bogazici U. 3058 Biomedical Science Tower 3. Pittsburgh, PA 15213. Epub ahead of print]. Gur M, Zomot E, Cheng MH, Bahar I.

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News | Computational & Systems Biology

http://www.csb.pitt.edu/category/news

Computational and Systems Biology. Computational Biology Ph.D. TECBio REU @ Pitt. Joseph C. Ayoob. James R. Faeder. Robin E. C. Lee. Daniel M. Zuckerman. Molecular Biophysics Structural Biology. Microbiology & Molecular Genetics. Dr Bahar participates as an invited speaker at the White House for the National Strategic Computing Initiative. A snapshot from multiscale simulations of dopamine signaling (by Cihan Kaya, in collaboration with Faeder, Sorkin, Sejnowski and Bahar labs). Rory came back to Pittsbu...

csb.pitt.edu

Workshops | Computational & Systems Biology

http://www.csb.pitt.edu/workshops

Computational and Systems Biology. Computational Biology Ph.D. TECBio REU @ Pitt. Joseph C. Ayoob. James R. Faeder. Robin E. C. Lee. Daniel M. Zuckerman. Molecular Biophysics Structural Biology. Microbiology & Molecular Genetics. Hands-on Workshop on Computational Biophysics 2013. This workshop was presented by members of the National Center for Multiscale Modeling of Biological Systems ( MMBioS. The course was based on case studies including the properties of membranes and membrane proteins, mechanisms ...

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smoothdock.ccbb.pitt.edu

Welcome to Carlos J Camacho's Lab — SmoothDock

Only in current section. Welcome to Carlos J Camacho's Lab. Intrinsic protein disorder has been found in many proteins. However, its origin has not been well understood. Our genome-wide survey indicates that the distribution of disorder depends strongly on protein function, and a first principles thermodynamic analysis explains the nature of this relationship. ( more. Using thermodynamic modeling and MD simulations, this work provides a framework for understanding the relative capacity of inherently unst...

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