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ReSpect for PhytochemicalsConstruction of RIKEN MSn spectral database for phytochemicals
http://spectra.psc.riken.jp/
Construction of RIKEN MSn spectral database for phytochemicals
http://spectra.psc.riken.jp/
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ReSpect for Phytochemicals | spectra.psc.riken.jp Reviews
https://spectra.psc.riken.jp
Construction of RIKEN MSn spectral database for phytochemicals
spectra.psc.riken.jp
ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/index
Ral database for phytochemicals (ReSpect) is a collection of literature and in-house MSn spectra data. For research on plant metabolomics.Now, a total of 9017. Spectra records are available. 5 spectra was added (data update) ► Change Log. RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database' (Phytochemistry. A consistent test and its totaling. Spectra similarity search service employing cosine product method. Index of ReSpect data.
ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/analyses/explains
1 Statistics of records of ReSpect (September 2011). 2 Evaluation of records in spectrum search with ReSpect. 1 Statistics of records of ReSpect (September 2011). 9658;next page [2. Evaluation of records in spectrum search with ReSpect]. Corresponding to 2,741. One major fragment spectra. One major fragment spectra. One major fragment spectra. Corresponding to 3,595. One major fragment spectra. Classification with compound class 1. 9650; Page Top. Number of records in compound class 1. D All data (%).
ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/literatures/literatures
ReSpect for Phytochemicals Data sourse. Blood, Sweat, and Spectra. An informatist said that all data were only data. Of course, it isn't true. All MSn spectra are crystals of blood, sweat, and tears of data producers such as natural product chemists and mass spec. analysts. ReSpect for Phytochemcals respects their effort to produce excellent MSn spectra data. We strongly recommended that all data users must cite corresponding original literatures in their publications. Rapid Commun Mass Spectrom. Zhang, ...
ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/licence/licence
This work is licensed under a Creative Commons Attribution - Noncommercial 2.1 Japan License. This website (http:/ spectra.psc.riken.jp/) is managed by RIKEN Center for Sustainable Resource Science. The legal title to all data in this website remains in RIKEN. Any person who accesses and uses this website should note and agree the following terms and conditions prior to using this website. RIKEN Center for Sustainable Resource Science : Metabolomics Research Group, LC-MS Branch.
ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/download/download
ReSpect Data All Archives. Plain text files of individual records are available from the data directory. Respect DataBase Dump for MySQL. ReSpect MS/MS fragmentation association rules. ReSpect MS/MS fragmentation association rules. MSMS association rules.zip. We already demonstrated the untargeted MS/MS spectral tag (MS2T)-based metabolomics method (Matsuda, et al., 2010; Matsuda, et al., 2009), which can record the fragmentation patterns of all detected metabolites. List of MS2T libraries.
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breathmintsforpenguins.blogspot.com
Breath Mints for Penguins: July 2014
http://breathmintsforpenguins.blogspot.com/2014_07_01_archive.html
Breath Mints for Penguins. Tuesday, July 29, 2014. Using SwissProt and ExPASy ENZYME to generate putative EC annotations for sequence data. There was a question. On Biostars about how to make EC assignments based on sequence. I gave one of the answers, suggesting a few possible solutions. One of my solutions was to Blast against ExPASy ENZYME. And base the annotations on the best hit from there. In this post I explain how to do that, and supply the necessary Python code. Sunday, July 27, 2014. A class to...
PRIMe LC-MS Branch
http://prime.psc.riken.jp/lcms
Liquid chromatography-mass spectrometry (LC-MS) branch of the Platform for RIKEN Metabolomics (PRIMe) pipeline is now ready for the analysis of plant secondary metabolites. The deta produced in the this branch will be distributed from this page. We wish to thank Mr. K. Akiyama and T. Sakurai in Integrated genome informatics research unit for helpful support. Matsuda et al (2010) AtMetExpress development: A phytochemical atlas of Arabidopsis thaliana development Plant Physiol. In press. [Pubmed]. From Act...
Plant-PrAS
http://plant-pras.riken.jp/menta.cgi/links/links
GC/MS, LC/MS, CE/MS . A Web site that assembles tools for metabolomics and transcriptomics. 8 339-345 (2008) [PubMed]. Innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. 54(2) e5(1-8) (2013) [PubMed]. A collection of literature and in-house MSn spectra data for research on plant metabolomics. 82 38-45 (2012) [PubMed]. A tool for liquid chromatography-fourier transfer ion cyclotron resonance-mass spectrometry (LC-FTICR-MS). Phenome, cDNA, mutant .
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ReSpect for Phytochemicals
Ral database for phytochemicals (ReSpect) is a collection of literature and in-house MSn spectra data. For research on plant metabolomics.Now, a total of 9017. Spectra records are available. 5 spectra was added (data update) ► Change Log. RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database' (Phytochemistry. A consistent test and its totaling. Spectra similarity search service employing cosine product method. Index of ReSpect data.
Spectra
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