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Stark Lab | Deciphering the transcriptional cis-regulatory code

Website of the Alexander Stark Group at the Research Institute of Molecular Pathology (IMP), Vienna

http://www.starklab.org/

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Stark Lab | Deciphering the transcriptional cis-regulatory code | starklab.org Reviews
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Website of the Alexander Stark Group at the Research Institute of Molecular Pathology (IMP), Vienna
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Stark Lab | Deciphering the transcriptional cis-regulatory code | starklab.org Reviews

https://starklab.org

Website of the Alexander Stark Group at the Research Institute of Molecular Pathology (IMP), Vienna

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factors.starklab.org factors.starklab.org

Stark Lab | Factors | Home

Factors @ Stark Lab. As an entry point use one of the examples below, search. For a specific protein at the bottom of the page, or perform an advanced search. Directly go to a factor (eg. Hey, FBgn0027788, or CG11194):.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | Home

Factors @ Stark Lab. As an entry point use one of the examples below, search. For a specific protein at the bottom of the page, or perform an advanced search. Directly go to a factor (eg. Hey, FBgn0027788, or CG11194):.

INTERNAL PAGES

starklab.org starklab.org
1

Stark Lab | Deciphering the transcriptional cis-regulatory code

http://www.starklab.org/archive

Deciphering the transcriptional cis-regulatory code. Lukasz Boryn PhD Graduation. Welcome to our new PhD Student. Congratulations to Vanja for receiving her HFSP postdoctoral fellowship. Tomas Kazmar PhD Graduation. Our factors website improved. Stark lab plasmids now available on Addgene. Congratulations to Vanja and our former lab member Daria for receiving EMBO postdoctoral fellowships. New STARR-seq website available. New group paper on functional characterization of transcriptional regulators. Starr...

2

| Stark Lab | Deciphering the transcriptional cis-regulatory code

http://www.starklab.org/events/index.html

Deciphering the transcriptional cis-regulatory code. July 2016, Lukasz’s PhD Defense and Farewell Celebration. July 2016, Stark Group Retreat. January 2016, Tomas’s PhD Defense Celebration. December 2015, Stark Group Christmas Dinner. October 2015, Christina Paliou visits to learn STARR-seq. August 2015, Stark Group Retreat. August 2014, ALS Ice Bucket Challenge. I'm sorry; your browser doesn't support HTML5 video in WebM with VP8. Get a recent version of Firefox, Chrome, or Safari. May 2012, Group Lunch.

3

| Stark Lab | Deciphering the transcriptional cis-regulatory code

http://www.starklab.org/members/index.html

Deciphering the transcriptional cis-regulatory code. 43 1 79730 - 3380. Alexander.stark@imp.ac.at. 43 1 79730 - 3381. Martina.rath@imp.ac.at. 43 1 79730 - 3383. Michaela.pagani@imp.ac.at. 43 1 79730 - 3379. Cosmas.arnold@imp.ac.at. 43 1 79730 - 3373. Katharina.schernhuber@imp.ac.at. Muhammad Mamduh Bin Ahmad Zabidi. 43 1 79730 - 3392. Muhammad.zabidi@imp.ac.at. 43 1 79730 - 3386. 43 1 79730 - 3369. 43 1 79730 - 3368. Sebastian.wienerroither@imp.ac.at. 43 1 79730 - 3368. 43 1 79730 - 3011. Research Instit...

4

| Stark Lab | Deciphering the transcriptional cis-regulatory code

http://www.starklab.org/publications/index.html

Deciphering the transcriptional cis-regulatory code. Rickels R, Hu D, Collings CK, Woodfin AR, Piunti A, Mohan M, Herz HM, Kvon E, Shilatifard A. An Evolutionary Conserved Epigenetic Mark of Polycomb Response Elements Implemented by Trx/MLL/COMPASS. Molecular Cell, 2016. Jul 21;63(2):318-28. Pubmed 27447986. Stampfel G, Kazmar T, Frank O, Wienerroither S, Reiter F, Stark A. Transcriptional regulators form diverse groups with context-dependent regulatory functions. Nature Reviews Genetics (2015). Zabidi M...

5

| Stark Lab | Deciphering the transcriptional cis-regulatory code

http://www.starklab.org/jobs/index.html

Deciphering the transcriptional cis-regulatory code. As our group uses molecular and computational methods, applicants with wet-lab or bioinformatics experience are welcome to join our lab. Summer Interns: Please apply via the VBC Summer School. PhD Positions: Please apply via the VBC PhD Program. Research Institute of Molecular Pathology. 1030 Vienna, Austria. Stark Group offical IMP. Website generation by Jekyll.

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factors.starklab.org factors.starklab.org

Stark Lab | Factors | dmel:sug

http://factors.starklab.org/factor/sug

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:Taf7

http://lego.starklab.org/factor/Taf7

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:sug

http://lego.starklab.org/factor/sug

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | Browse

http://lego.starklab.org/browse

Factors @ Stark Lab. Gene Name ▾. Gene Name ▴. Activity (log2) in S2 cells. Activity (log2) in S2 cells. Activity (log2) in S2 cells.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | Home

http://lego.starklab.org/home

Factors @ Stark Lab. As an entry point use one of the examples below, search. For a specific protein at the bottom of the page, or perform an advanced search. Directly go to a factor (eg. Hey, FBgn0027788, or CG11194):.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:Bap55

http://lego.starklab.org/factor/Bap55

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:pnt

http://lego.starklab.org/factor/pnt

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:CG8388

http://lego.starklab.org/factor/CG8388

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:scro

http://lego.starklab.org/factor/scro

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org lego.starklab.org

Stark Lab | Factors | dmel:D19B

http://lego.starklab.org/factor/D19B

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

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Stark Lab | Deciphering the transcriptional cis-regulatory code

Deciphering the transcriptional cis-regulatory code. Deciphering the transcriptional cis-regulatory code. We use both bioinformatics- and molecular biology-based methods to achieve a systematic understanding of transcriptional regulatory elements (enhancers). Our goal is to “crack” the regulatory code, predict enhancer activity from the DNA sequence, and understand how transcriptional networks define cellular and developmental programs. Welcome to our new postdoc. Welcome to our new lab members.

starklab.slu.edu starklab.slu.edu

Stark, William S.

See what Saint Louis University. Go to Biology's Homepage. DISCLAIMER: The views and opinions expressed in this page are strictly those of the author. The contents of this page have not been reviewed or approved by Saint Louis University. For 42 years, University Research and Teaching. And presentations on vision, Drosophila. Ultraviolet and vitamin A. 2008 Chauncey E Finch Award for Excellence in Mentoring from the College of Arts and Sciences. 1,723 non-self citations. Semester (and one semester. Retin...

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