structureppi.bioinfo.cnio.es

Structure

This workflow offers several functionalities to explore the consequence of protein mutations. It reports features that overlap the mutations, or that are in close physical proximity. This workflow makes use of PDB files to calculate residues in close proximity. This information is used to find features close to the mutations, at a distance of 5 angstroms, or mutations in residues close to residues in a complex partner, at a distance of up to 8 angstroms. Bioinformatics (2015); 31(14):2397-2399. Use the f...

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Structure | structureppi.bioinfo.cnio.es Reviews

<META> DESCRIPTION

This workflow offers several functionalities to explore the consequence of protein mutations. It reports features that overlap the mutations, or that are in close physical proximity. This workflow makes use of PDB files to calculate residues in close proximity. This information is used to find features close to the mutations, at a distance of 5 angstroms, or mutations in residues close to residues in a complex partner, at a distance of up to 8 angstroms. Bioinformatics (2015); 31(14):2397-2399. Use the f...

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1 structure ppi

2 reference

3 wizard

4 a mutated isoform

5 ensembl protein id

6 such as

7 associated gene name

8 or gene symbol

9 ensembl gene id

10 uniprot/swissprot accession

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structure ppi,reference,wizard,a mutated isoform,ensembl protein id,such as,associated gene name,or gene symbol,ensembl gene id,uniprot/swissprot accession,scores,structure ppi feature score,cosmic,firestar,disease,unclassified,polymorphism,no effect

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Structure | structureppi.bioinfo.cnio.es Reviews

https://structureppi.bioinfo.cnio.es

This workflow offers several functionalities to explore the consequence of protein mutations. It reports features that overlap the mutations, or that are in close physical proximity. This workflow makes use of PDB files to calculate residues in close proximity. This information is used to find features close to the mutations, at a distance of 5 angstroms, or mutations in residues close to residues in a complex partner, at a distance of up to 8 angstroms. Bioinformatics (2015); 31(14):2397-2399. Use the f...

INTERNAL PAGES

structureppi.bioinfo.cnio.es

1

Structure

http://structureppi.bioinfo.cnio.es/Structure/annotate

Annotates genomic mutations based on the protein features that are overlapping amino-acid changes. Or use the text area below. Non synonymous (default: false). Click to load example data:. CNIO Centro Nacional de Investigaciones Oncologicas (Spanish National Cancer Research Center). Structural Computational Biology Group. C/ Melchor Fernandez Almagro, 3, E-28029 Madrid.

2

Structure

http://structureppi.bioinfo.cnio.es/Structure/neighbours_in_pdb

Mdash; Neighbours in pdb. Use a pdb to find the residues neighbouring, in three dimensional space, a particular residue in a given sequence. Or use the text area below. Or use the text area below. Or use the text area below. Click to load example data:. CNIO Centro Nacional de Investigaciones Oncologicas (Spanish National Cancer Research Center). Structural Computational Biology Group. C/ Melchor Fernandez Almagro, 3, E-28029 Madrid.

3

Structure

http://structureppi.bioinfo.cnio.es/Structure/pdb_alignment_map

Mdash; Pdb alignment map. Find the correspondence between sequence positions in a PDB and in a given sequence. PDB positions are reported as. Or use the text area below. Or use the text area below. Click to load example data:. CNIO Centro Nacional de Investigaciones Oncologicas (Spanish National Cancer Research Center). Structural Computational Biology Group. C/ Melchor Fernandez Almagro, 3, E-28029 Madrid.

4

Structure

http://structureppi.bioinfo.cnio.es/Structure/pdb_chain_position_in_sequence

Mdash; Pdb chain position in sequence. Translate the positions of amino-acids in a particular chain of the provided PDB into positions inside a given sequence. Or use the text area below. Or use the text area below. Or use the text area below. Click to load example data:. CNIO Centro Nacional de Investigaciones Oncologicas (Spanish National Cancer Research Center). Structural Computational Biology Group. C/ Melchor Fernandez Almagro, 3, E-28029 Madrid.

5

Structure

http://structureppi.bioinfo.cnio.es/Structure/annotate_mi

Mdash; Annotate mi. Annotates mutated isoforms based on the protein features that are overlapping amino-acid changes. Or use the text area below. Click to load example data:. CNIO Centro Nacional de Investigaciones Oncologicas (Spanish National Cancer Research Center). Structural Computational Biology Group. C/ Melchor Fernandez Almagro, 3, E-28029 Madrid.

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Structure

This workflow offers several functionalities to explore the consequence of protein mutations. It reports features that overlap the mutations, or that are in close physical proximity. This workflow makes use of PDB files to calculate residues in close proximity. This information is used to find features close to the mutations, at a distance of 5 angstroms, or mutations in residues close to residues in a complex partner, at a distance of up to 8 angstroms. Bioinformatics (2015); 31(14):2397-2399. Use the f...

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