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Plants, Systems & Bioinformatics

Plants, Systems and Bioinformatics. Sunday, January 18, 2015. Change node and edge colors in Cytoscape with Python. Often with Cytoscape we are interested in overlaying other information such as expression data. In order to easily do this without changing the layout/format of the original file it requires a bit of programming. Here I will explain how this can be easily done in python and have provided some of my own code (although it is still a bit messy). Edges = soup.find all("edge") print edges[0].

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Plants, Systems & Bioinformatics | sudogenes.com Reviews

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Plants, Systems and Bioinformatics. Sunday, January 18, 2015. Change node and edge colors in Cytoscape with Python. Often with Cytoscape we are interested in overlaying other information such as expression data. In order to easily do this without changing the layout/format of the original file it requires a bit of programming. Here I will explain how this can be easily done in python and have provided some of my own code (although it is still a bit messy). Edges = soup.find all(edge) print edges[0].

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Plants, Systems & Bioinformatics | sudogenes.com Reviews

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Plants, Systems and Bioinformatics. Sunday, January 18, 2015. Change node and edge colors in Cytoscape with Python. Often with Cytoscape we are interested in overlaying other information such as expression data. In order to easily do this without changing the layout/format of the original file it requires a bit of programming. Here I will explain how this can be easily done in python and have provided some of my own code (although it is still a bit messy). Edges = soup.find all("edge") print edges[0].

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sudogenes.com

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Plants, Systems & Bioinformatics: Change node and edge colors in Cytoscape with Python

http://www.sudogenes.com/2015/01/change-nodes-and-edge-color-in.html

Plants, Systems and Bioinformatics. Sunday, January 18, 2015. Change node and edge colors in Cytoscape with Python. Often with Cytoscape we are interested in overlaying other information such as expression data. In order to easily do this without changing the layout/format of the original file it requires a bit of programming. Here I will explain how this can be easily done in python and have provided some of my own code (although it is still a bit messy). Edges = soup.find all("edge") print edges[0].

2

Plants, Systems & Bioinformatics: The Five Obstacles You Will Face in Your First Year of Grad School

http://www.sudogenes.com/2013/07/the-five-obstacles-you-will-face-in.html

Plants, Systems and Bioinformatics. Saturday, July 20, 2013. The Five Obstacles You Will Face in Your First Year of Grad School. 1) Finding the one (your advisor):. Http:/ www.phdcomics.com/comics/archive.php? 2) Pass your classes:. It is actually easier then it seems to pass as long as you complete all the assignments and actually try. This does not mean that the workload is not heavy! In other words do not stress grades too much. Form study groups, try hard and you will be fine. Part of grad sc...

3

Plants, Systems & Bioinformatics: 5 Apps All Graduate Students Should Have

http://www.sudogenes.com/2013/03/5-apps-all-graduate-students-should-have.html

Plants, Systems and Bioinformatics. Tuesday, March 26, 2013. 5 Apps All Graduate Students Should Have. The one thing I have repeatedly learned in graduate school is that you will always be adding to your TODO list. This list is never ending and often bogs me down. Wunderlist works well for me because it allows me to set deadlines and has a friendly interface. I keep everything from school work to twitter post on it =). If you have not started using Dropbox or Google Docs yet, get on it! This allows you t...

4

Plants, Systems & Bioinformatics: RNASeq Analysis: The Basics

http://www.sudogenes.com/2013/05/everything-you-wanted-to-know-on-rnaseq.html

Plants, Systems and Bioinformatics. Wednesday, May 1, 2013. RNASeq Analysis: The Basics. Strange and Mysterious File Types (you might encounter). Sequence Read Archive format (SRA). This is an NCBI specific file format used because of its ability to compress read sequence information. This is often the output of many illumina sequencing pipelines. BAM and SAM Files:. These are often used as reference for counting how many reads map to genomic regions. These are tab delimited files containing the , st...

5

Plants, Systems & Bioinformatics: And so it begins

http://www.sudogenes.com/2014/01/and-so-it-begins.html

Plants, Systems and Bioinformatics. Monday, January 20, 2014. And so it begins. As a second year PhD student in Biology at UC Davis, we are required to taking one last exam before we can move on to candidacy. I take mine sometime in the next 3-6 months! Subscribe to: Post Comments (Atom). View my complete profile. I am a BMCDB PhD student in the Brady Lab at UC Davis. I enjoy plants, networks and computers! And so it begins. Simple template. Template images by andynwt.

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Plants, Systems & Bioinformatics

Plants, Systems and Bioinformatics. Sunday, January 18, 2015. Change node and edge colors in Cytoscape with Python. Often with Cytoscape we are interested in overlaying other information such as expression data. In order to easily do this without changing the layout/format of the original file it requires a bit of programming. Here I will explain how this can be easily done in python and have provided some of my own code (although it is still a bit messy). Edges = soup.find all("edge") print edges[0].

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