bioconductor.org
Bioconductor - DESeq2
http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
To install this package, start R and enter:. Try http:/ if https:/ URLs are not supported source("https:/ bioconductor.org/biocLite.R") biocLite("DESeq2"). In most cases, you don't need to download the package archive at all. Differential gene expression analysis based on the negative binomial distribution. Bioconductor version: Release (3.3). Author: Michael Love (HSPH Boston), Simon Anders, Wolfgang Huber (EMBL Heidelberg). Citation (from within R, enter. To install this package, start R and enter:.
bioconductor.org
Bioconductor - easyRNASeq
http://www.bioconductor.org/packages/release/bioc/html/easyRNASeq.html
To install this package, start R and enter:. Try http:/ if https:/ URLs are not supported source("https:/ bioconductor.org/biocLite.R") biocLite("easyRNASeq"). In most cases, you don't need to download the package archive at all. Count summarization and normalization for RNA-Seq data. Bioconductor version: Release (3.3). Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler. Citation (from within R, enter. To install this package, start R and enter:. 1111), graphics, IRanges.
stackoverflow.com
'r' tag wiki - Stack Overflow
http://stackoverflow.com/tags/r/info
To customize your list. More stack exchange communities. Tour Start here for a quick overview of the site. Help Center Detailed answers to any questions you might have. Meta Discuss the workings and policies of this site. About Us Learn more about Stack Overflow the company. Business Learn more about hiring developers or posting ads with us. Is a free, open-source programming language and software environment for statistical computing. Combined with lexical scoping semantics inspired by Scheme. A basic i...
bioconnector.org
Further Resources
http://bioconnector.org/workshops/help.html
Interactive Visualization with JavaScript and R. Reproducible Research and RMarkdown. Building Shiny Web Apps in R. Essential Statistics with R. Survival Analysis with TCGA Data. Harvesting Data from NCBI. NGS DATA ANALYSIS - -. FUTURE COURSES - -. Reproducible Research and RMarkdown. Essential Statistics with R. Survival Analysis with TCGA Data. Reproducible Research and RMarkdown. There are over 100,000 questions tagged with R on SO. Here are the most popular ones, ranked by vote. A longer dplyr tutori...
cobra20.fhcrc.org
Bioconductor - Newsletter, April 2015
http://cobra20.fhcrc.org/help/newsletters/2015_April
Newsletter, April 2015. Posted by Valerie Obenchain. On April 17, the release of. 31 will mark the 24th release of the software. The project started in 2001 with the first svn commits made in May of that year:. R3 rgentlem 2001-05-25 14:08:57 -0700 (Fri, 25 May 2001) r2 rgentlem 2001-05-25 08:28:31 -0700 (Fri, 25 May 2001) r1 (no author) 2001-05-25 08:28:31 -0700 (Fri, 25 May 2001). At the time of the first official Bioconductor manuscript. In 2004 the project consisted of. And the use of web sockets to ...
bioconductor.org
Bioconductor - survcomp
http://bioconductor.org/packages/release/bioc/html/survcomp.html
To install this package, start R and enter:. Try http:/ if https:/ URLs are not supported source("https:/ bioconductor.org/biocLite.R") biocLite("survcomp"). In most cases, you don't need to download the package archive at all. Performance Assessment and Comparison for Survival Analysis. Bioconductor version: Release (3.3). R package providing functions to assess and to compare the performance of risk prediction (survival) models. Citation (from within R, enter. To install this package, start R and enter:.
cobra20.fhcrc.org
Bioconductor - Community Contributed Help Resources
http://cobra20.fhcrc.org/help/community
Community Contributed Help Resources. Community Contributed Help Resources. A small selection of the many resources available for learning Bioconductor, contributed by members of the Bioconductor community. Resources from MOOC: PH525x Data Analysis for Genomics book. Video Lectures by Rafael Irizarry and guests. R/Bioconductor Notes by Thomas Girke. Using Bioconductor to Analyze your 23andme Data by Vince Buffalo. Bioconductor Code Search by Itoshi NIKAIDO. R/Bioconductor Blog By Sean Davis.
cobra20.fhcrc.org
Bioconductor - Publications
http://cobra20.fhcrc.org/help/publications
Irizarry R, et al. (2015) Biomedical Data Science. Course Notes, EdX PH525.1x. Huber W, et al. (2015) Orchestrating high-throughput genomic analysis with. Nature Methods 12:115-121; doi:10.1038/nmeth.3252 (full-text free with registration). PMC4509590. Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, and Smyth, GK (2015) limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucl Acids Res; doi:10.1093/nar/gkv007. Genome Biology 15:550; doi:10.1186/s13059-014-0550-8.
cobra20.fhcrc.org
Bioconductor - BiocViews
http://cobra20.fhcrc.org/packages/devel/BiocViews.html
Developers: check this box to toggle the visibility of childless biocViews. Contact us: support.bioconductor.org. Hosting provided by Fred Hutchinson Cancer Research Center.
bioc.ism.ac.jp
Bioconductor - 3.4 Software Packages
https://bioc.ism.ac.jp/packages/devel/bioc
Bioconductor version: Development (3.4). Tobias Verbeke, Willem Ligtenberg. Automated Affymetrix Array Analysis Umbrella Package. Tobias Verbeke, Willem Ligtenberg. Automated Affymetrix Array Analysis Base Package. Tobias Verbeke, Willem Ligtenberg. Automated Affymetrix Array Analysis Classification Package. Tobias Verbeke, Willem Ligtenberg. Automated Affymetrix Array Analysis Core Package. Tobias Verbeke, Willem Ligtenberg. Automated Affymetrix Array Analysis Preprocessing Package. Functions useful for...
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