synapse.org

cazencott.info

Talks & Posters - Chloé-Agathe Azencott

http://cazencott.info/index.php/pages/Talks

Researcher at the Centre for Computational Biology (CBIO) of Mines ParisTech, Institut Curie and INSERM. All the presentation materials on this page are shared under a CC BY-NC 4.0. If you're interested in .tex or .odt sources (for slides), just ask. June 15, 2016. Benefits of using scikit-learn for a machine learning researcher and instructor. May 21, 2016. Beware of circularity: A critical assessment of the state of the art in deleteriousness prediction of missense variants. On June 1st, 2016. Reaching...

dreamchallenges.org

Closed Challenges Archives - Dream Challenges

http://dreamchallenges.org/project-list/closed

Challenges that appear ONLY on the closed page. ICGC-TCGA SMC-DNA Meta Challenge. ICGC-TCGA SMC-DNA Meta Challenge. August 2015- April 2016. The ICGC-TCGA DREAM Somatic Mutation Calling Meta-pipeline Challenge (SMC-DNA Meta) (herein, The Challenge) is an international effort to improve standard methods for identifying cancer-associated mutations and rearrangements in whole-genome sequencing (WGS) data. AstraZeneca-Sanger Drug Combination Prediction DREAM Challenge. June 23- October 2015. DREAM 9.5 -D...

smallchangebio.wordpress.com

Small Change Bioinformatics | Page 3

https://smallchangebio.wordpress.com/page/3

June 28, 2013. Scientific Python 2013, Day 2: Bioinformatics frameworks, open science and reproducibility. I’m at the 2013 Scientific Python conference. In beautiful Austin, Texas. I’m helping organize this year’s Bioinformatics Symposium. And learning about Python scaling and reproducibility from the Scientific Python community. These are my notes from the second day. See also my notes from the first day. Ian Rees – Bioinformatics symposium: electron microscopy platform. Synapse is a web framework that ...

informatics.gpcnetwork.org

DataSecurity – gpc-informatics

https://informatics.gpcnetwork.org/trac/Project/wiki/DataSecurity

Data Sharing for Breast Cancer Survey. Review Criterion 11: Clear, thorough, and proven policies to maintain data. Data Sharing for Breast Cancer Survey. Brainstorming on how to arrange work for the following milestone:. 315 Approved approaches to securely de-identify and re-identify patient data are implemented (RC11). Sites implement approach 5/1/14 5/31/14. Conduct test with sites using real data 5/21/14 6/15/14. Reviewing our approach ( ticket:73#comment:8. HERON ETL from DevTeams#kumc. The KUMC HERO...

commonmind.org

Data Generation | CommonMind Consortium

http://commonmind.org/WP/data-generation

Tools & Resources. To access the CommonMind Consortium Data please see the CommonMind Consortium Knowledge Portal. Release 1.1 (September 2015). The September release contains the following supplementary files for the March 2015 DLPFC release. The RNA sequencing BAM files with aligned and unmapped reads. Of the Genotype data. Of the Genotype data. Release 1 (March 2015). These data will be also be released through this portal. Collaboration Space and Public Data Release.

commonmind.org

Tools & Resources | CommonMind Consortium

http://commonmind.org/WP/tools-resources

Tools & Resources. Tools & Resources. The Mount Sinai NIH Brain and Tissue Repository. NBTR) serves the human postmortem brain tissue needs of investigators within the Icahn School of Medicine at Mount Sinai and the Bronx VA Medical Center and the Neuroscience community at large. The University of Pennsylvania Alzheimer’s Disease Core Center. The University of Pittsburgh houses one of the NIH NeuroBioBank. The purpose of the Human Brain Collection Core. Sample Processing and Data Generation. Synapse is a...

rna.genomics.purdue.edu

2015 Breast Cancer Challenge - Purdue Genomics Wiki

http://rna.genomics.purdue.edu/2015_Breast_Cancer_Challenge

2015 Breast Cancer . 2016 Biol19500H - G. Page last modified 15:08, 4 Aug 2015. 2015 Breast Cancer Challenge. Was this page helpful? 2015 Breast Cancer Challenge. For details see https:/ www.synapse.org. Requested access to all data sets - gribskov. Requests approved by Purdue and forwarded to DACs - gribskov. CGEMS data approved - gribskov. Need to get annotation for HumanHap550v1.1 chip, i.e., what is the chromosome location and gene location of each gene? Make sure you have read the data use agreement.

sagebase.org

Governance – Sage Bionetworks

http://sagebase.org/governance

Governance at Sage Bionetworks. Sage Bionetwork’s governance work seeks to explore and address the real-world impacts of widespread data reuse in cloud-based open science . We develop policies and procedures for the responsible collection and use of data and other research assets. Our work covers patient-centered consent in mobile clinical studies. The role of governance for mHealth. Sage Bionetworks’ eConsent. Includes well-documented Terms and Conditions of Use. Doerr, Megan and Suver, Christine and Wi...

sagebase.org

Challenges – Sage Bionetworks

http://sagebase.org/challenges

DREAM Challenges are crowdsourcing challenges examining questions in biology and medicine. Sage Bionetworks’ open computational platform, Synapse. In addition to the benefit that Synapse provides to groups running Challenges, Sage Bionetworks’ leaders, computational biologists, data use and oversight experts. ICGC-TCGA DREAM Somatic Mutation Calling – RNA Challenge (SMC-RNA). Transcription Factor Binding Site Prediction Challenge. The Digital Mammography DREAM Challenge. Learn about open Challenges.

cancercontrol.cancer.gov

Featured Infographics - Cancer Control and Population Sciences

http://cancercontrol.cancer.gov/infographics.html

Maps of Awarded Grants. Apply for Cancer Control Grants. Training and Career Development. Application Submission and Review. Resources and Opportunities for New Grantees. Archive of Funding Opportunities. Tracking the Cancer Burden. DCCPS Public Data Sets and Analyses. Patient-centered Communication and Care Coordination. Precision Medicine and Population Health. Maps of Awarded Grants. Estimated Cancer Prevalence by Age in the US Population from 1975 to 2040. SEER Cancer Statistics Review (CSR) 1975-2013.