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SynBioMine: Home

Integrated searcheable database for synthetic genomics

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SynBioMine: Home | synbiomine.org Reviews
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Integrated searcheable database for synthetic genomics
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SynBioMine: Home | synbiomine.org Reviews

https://synbiomine.org

Integrated searcheable database for synthetic genomics

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synbiomine.org synbiomine.org
1

SynBioMine: Custom query

http://www.synbiomine.org/synbiomine/customQuery.do

Data mining for Synthetic Biology. Advanced users can use a flexible query interface to construct their own data mining queries. The QueryBuilder lets you view the data model, apply constraints and select output. You can also export queries to share them with others. Import query from XML. Login to view saved queries. Select a Data Type to Begin a Query. Click on a class name for a description or double click on a class name to create a new query starting at that class. Import query from XML.

2

SynBioMine: Template query

http://www.synbiomine.org/synbiomine/template.do?name=PathwayGenes&scope=global

Data mining for Synthetic Biology. Current page: - - /synbiomine/template.do? InterMine is funded by the. 2002 - 2015 Department of Genetics, University of Cambridge, Downing Street,. Cambridge CB2 3EH, United Kingdom.

3

SynBioMine: Home

http://www.synbiomine.org/synbiomine/mymine.do

Data mining for Synthetic Biology. Search SynBioMine. Enter names. For genes, proteins, domains, ontology terms, authors, etc. (e.g. CHEY BACSU, two-component, phosphorelay regulation). Eg ArcA, CheW, EG11609, LacZ, EG11140, DnaX, EG12006, EG12385, CynR, EG12007, b4112, JW1871. SynBioMine integrates many types of data related to synthetic biology. And more. You can run flexible queries, export results and analyse lists of data. Please go to the forum. For news and discussion, the Github issues list.

4

SynBioMine: Template query

http://www.synbiomine.org/synbiomine/template.do?name=geneAllProtOrg&scope=global

Data mining for Synthetic Biology. Current page: - - /synbiomine/template.do? InterMine is funded by the. 2002 - 2015 Department of Genetics, University of Cambridge, Downing Street,. Cambridge CB2 3EH, United Kingdom.

5

SynBioMine: Template queries page

http://www.synbiomine.org/synbiomine/templates.do

Data mining for Synthetic Biology. Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites. Gene (B. subtilis 168) - Promoters Expression.

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justincc.org justincc.org

Papers, Presentations and Interviews – justincc.org

http://justincc.org/blog/papers

Papers, Presentations and Interviews. Papers, Presentations and Interviews. Here is a list of the various speeches, presentations, papers and panels that I’ve given or been involved with over the years. Optimizing and Improving OpenSimulator Performance. 8211; presented at the OpenSimulator Community Conference 2014. Connections in an Open Place. 8211; keynote speech at Virtual Worlds Best Practices in Education 2014. OpenSimulator Configuration File World Tour. And published by the IEEE. I was a member ...

justincc.org justincc.org

October 2013 – justincc.org

http://justincc.org/blog/2013/10

Papers, Presentations and Interviews. Running a Conference in OpenSimulator – The Technical Side – Part 2. October 29, 2013. Bull; 4 Comments. In part 1, I talked about the hardware that we used for the conference and our failover strategy. In this blog post, I’m going to talk about how we went from struggling to get 80 avatars into the keynote area…. Read more →. Running a Conference in OpenSimulator – The Technical Side – Part 1. October 18, 2013. Bull; 3 Comments. Read more →. October 17, 2013. Hi fol...

justincc.org justincc.org

September 2013 – justincc.org

http://justincc.org/blog/2013/09

Papers, Presentations and Interviews. This week in OpenSim Dev – week ending 21st September 2013. September 26, 2013. Bull; 1 Comment. Hello everybody. This is a summary of this week’s development changes in OpenSimulator. Except where otherwise specified, the changes described here appear only in OpenSimulator’s cutting edge ‘master’ branch in OpenSimulator’s Git source control system. Only changes that I think…. Read more →. These two weeks in OpenSim Dev – weeks ending 14th September 2013. Over time, ...

justincc.org justincc.org

August 2015 – justincc.org

http://justincc.org/blog/2015/08

Papers, Presentations and Interviews. Everything that has a beginning has an end. August 9, 2015. Bull; 35 Comments. In the summer of 2007 I was sitting in my office at IBM wondering what to do next. I’d recently spent a year planning out a feature only to see a change in plans make that effort completely irrelevant. This…. Read more →. Hi, I'm Justin Clark-Casey, developer on SynBioMine. An open-source data warehouse for synthetic biology. Core developer, hence most of the entries on this blog :).

justincc.org justincc.org

Hire me – justincc.org

http://justincc.org/blog/hire-me

Papers, Presentations and Interviews. Apologies, I’m not available for any new work at this time. If you want to know when this situation changes then please e-mail me. You can see a record of my contributions to OpenSimulator. On Ohloh (my handle is justincc). Since late 2008 I’ve worked for a number of clients, ranging from individuals and small educational institutions, through to startups, universities such as McMaster University. Large research organizations such as Sandia National Laboratories.

justincc.org justincc.org

June 2014 – justincc.org

http://justincc.org/blog/2014/06

Papers, Presentations and Interviews. These 8 weeks in OpenSim Dev – weeks ending 21st June 2014. June 27, 2014. Bull; 0 Comments. Hello everybody. This is a summary of the last period of development changes in OpenSimulator. Except where otherwise specified, the changes described here appear only in OpenSimulator’s cutting edge ‘master’ branch in OpenSimulator’s Git source control system. Only changes that…. Read more →. Call for Development and Open Source track proposals at OSCC 2014. June 24, 2014.

justincc.org justincc.org

June 2013 – justincc.org

http://justincc.org/blog/2013/06

Papers, Presentations and Interviews. This week in OpenSim Dev – week ending 22nd June 2013. June 26, 2013. Bull; 0 Comments. Hello everybody. This is a summary of this week’s development changes in OpenSimulator. Except where otherwise specified, the changes described here appear only in OpenSimulator’s cutting edge ‘master’ branch in OpenSimulator’s Git source control system. Only changes that I think…. Read more →. This week in OpenSim Dev – week ending 15th June 2013. June 20, 2013. Bull; 1 Comment.

justincc.org justincc.org

December 2014 in OpenSim Dev – justincc.org

http://justincc.org/blog/2015/03/16/december-2014-in-opensim-dev

Papers, Presentations and Interviews. December 2014 in OpenSim Dev. March 16, 2015. Bull; 0 Comments. Hello everybody. This is a summary of last month’s development changes in OpenSimulator. Except where otherwise specified, the changes described here appear only in OpenSimulator’s cutting edge ‘master’ branch in OpenSimulator’s Git source control system. Only changes that I think will be interesting to end users are listed. Released on November 11th 2014). I allowed scripts in an attachments on an owned...

justincc.org justincc.org

November 2014 in OpenSim Dev – justincc.org

http://justincc.org/blog/2015/01/30/november-2014-in-opensim-dev

Papers, Presentations and Interviews. November 2014 in OpenSim Dev. January 30, 2015. Bull; 0 Comments. Hello everybody. This is a summary of November 2014 development changes in OpenSimulator. Slowly catching up to the present day. This is a long post since it incorporates the merge of the work I did leading up to the OpenSimulator Community Conference in order to improve performance under high avatar numbers. Released on November 11th 2014). Please click here if you want to sponsor my OpenSimulator work.

justincc.org justincc.org

August 2013 – justincc.org

http://justincc.org/blog/2013/08

Papers, Presentations and Interviews. This week in OpenSim Dev – week ending 24th August 2013. August 30, 2013. Bull; 0 Comments. Hello everybody. This is a summary of this week’s development changes in OpenSimulator. Except where otherwise specified, the changes described here appear only in OpenSimulator’s cutting edge ‘master’ branch in OpenSimulator’s Git source control system. Only changes that I think…. Read more →. This week in OpenSim Dev – week ending 17th August 2013. August 23, 2013. Hello eve...

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SynBioMine: Home

Data mining for Synthetic Biology. Search SynBioMine. Enter names. For genes, proteins, domains, ontology terms, authors, etc. (e.g. CHEY BACSU, two-component,. Eg ArcA, CheW, EG11609, LacZ, EG11140, DnaX, EG12006, EG12385, CynR, EG12007, b4112, JW1871. SynBioMine integrates many types of data related to synthetic biology covering,. And more. You can run flexible queries, export results and analyse lists of data. Please go to the forum. For news and discussion,the Github issues list. All Genes in organism.

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