treetapper-dev.blogspot.com
TreeTapper-Dev: TreeTapper down Dec. 26-28
http://treetapper-dev.blogspot.com/2011/11/treetapper-down-dec-26-28.html
A blog describing the development of the TreeTapper.org website. Monday, November 28, 2011. TreeTapper down Dec. 26-28. TreeTapper will be down Dec. 26-28, 2011, due to the upgrade process to UTK's infrastructure. Subscribe to: Post Comments (Atom). The Tree of Life. A mini rant about diversity at meetings #STEMDiversity #YAMMM #manel. GRBio: A Call for Community Curation - what community? Why is English - and biology - so Complicated? Basics of Adaptive Promoting. Knoxville, TN, United States.
treetapper-dev.blogspot.com
TreeTapper-Dev: Visualizing trees
http://treetapper-dev.blogspot.com/2008/10/visualizing-trees.html
A blog describing the development of the TreeTapper.org website. Tuesday, October 14, 2008. We recently had a community summit at NESCent on directions for the future. As part of the biodiversity and phylogenetics breakout group (see notes here. One thing that came up was a need for better ways of visualizing trees [one good idea was inviting Ben Fry. To NESCent to work on this]. Rod Page. But why, with so many programs, do people feel that so much more work is needed? November 7, 2008 at 12:40 AM. Basic...
treetapper-dev.blogspot.com
TreeTapper-Dev: TreeTapper code now available
http://treetapper-dev.blogspot.com/2009/07/treetapper-code-now-available.html
A blog describing the development of the TreeTapper.org website. Thursday, July 30, 2009. TreeTapper code now available. The code for TreeTapper (the website's mostly PHP code) is now available. I'll be continuing to modify it, but please feel free to look it over and suggest (or submit) corrections, esp. regarding security. Subscribe to: Post Comments (Atom). The Tree of Life. A mini rant about diversity at meetings #STEMDiversity #YAMMM #manel. GRBio: A Call for Community Curation - what community?
brianomeara.info
Software | Brian O'Meara Lab
http://brianomeara.info/software
Brian O'Meara Lab. Answering evolutionary questions by building and applying phylogenetic methods. Model Selection Using the Akaike Information Criterion (AIC). Guidelines & Recommendations. Should you go to grad school to be a professor? I develop a variety of open source software and scripts. I generally use perl for scripts and C/C for software, but I also code in R, PHP, javascript, and Matlab. The code hosting has moved to Google code. I co-organized a hackathon in comparative methods in R. The Tree...
treetapper-dev.blogspot.com
TreeTapper-Dev: Installing on Leopard
http://treetapper-dev.blogspot.com/2009/08/installing-on-leopard.html
A blog describing the development of the TreeTapper.org website. Monday, August 31, 2009. I'm moving my hosting from NESCent's servers to a server in my lab (running Mac OS 10.5). Having immediate access to the database structure will be helpful in continuing TreeTapper's development. Installing and configuring postgres on the Mac has taken some work. One useful site so far is here. Though note that the latest version of postgres is 8.4, not 8.3). I'll post more as progress is made. The Tree of Life.
treetapper-dev.blogspot.com
TreeTapper-Dev: Flash rather than Processing?
http://treetapper-dev.blogspot.com/2008/09/flash-rather-than-processing.html
A blog describing the development of the TreeTapper.org website. Tuesday, September 23, 2008. Flash rather than Processing? I'm now wondering whether Processing was a bad choice for visualizing missing methods (though it's still better than the horribly slow Google Maps implementation). It results in Java applets, which can take quite some time to load on a page (see other general criticisms here. Or the like]. Also, on the stable site ( http:/ www.treetapper.org. I've tried playing with the code. I just...
treetapper-dev.blogspot.com
TreeTapper-Dev: Impending downtime
http://treetapper-dev.blogspot.com/2011/03/impending-downtime.html
A blog describing the development of the TreeTapper.org website. Friday, March 11, 2011. UTK's Office of Information Technology will be performing some work on the network that will result in the main university website, department websites, individual sites, and many campus buildings to be completely offline from the afternoon of Friday March 18 until sometime March 20. TreeTapper will sadly be included in this outage. Subscribe to: Post Comments (Atom). The Tree of Life. Basics of Adaptive Promoting.
treetapper-dev.blogspot.com
TreeTapper-Dev: Status
http://treetapper-dev.blogspot.com/2008/07/status.html
A blog describing the development of the TreeTapper.org website. Friday, July 11, 2008. I've been quiet on the blog lately. I was prepping for the Evolution meetings; since coming back, I've been mostly focusing on a revision of a paper. Paul McMillan's Google Summer of Code project is running along well ( dbgraphnav. I just made something to parse a series of subversion. Subscribe to: Post Comments (Atom). The Tree of Life. A mini rant about diversity at meetings #STEMDiversity #YAMMM #manel.
treetapper-dev.blogspot.com
TreeTapper-Dev: TreeTapper hosting moving
http://treetapper-dev.blogspot.com/2011/02/treetapper-hosting-moving.html
A blog describing the development of the TreeTapper.org website. Thursday, February 24, 2011. Are also hosted on the server). So far the move has gone well, now to see if the DNS starts pointing properly. TreeTapper may be down for a few hours while the move completes. MacPorts has been helpful for things like recompiling a version of PHP that can talk to a database. Subscribe to: Post Comments (Atom). The Tree of Life. A mini rant about diversity at meetings #STEMDiversity #YAMMM #manel.
treetapper-dev.blogspot.com
TreeTapper-Dev: Using large trees is surprisingly difficult
http://treetapper-dev.blogspot.com/2008/10/using-large-trees-is-surprisingly.html
A blog describing the development of the TreeTapper.org website. Friday, October 17, 2008. Using large trees is surprisingly difficult. There has been a lot of effort and interest in phylogenetics in getting big trees (1000 taxa). This should be the most difficult problem in phylogenetics - after all, finding the best tree is generally (under most optimization criteria) NP-hard. The relevance to TreeTapper is how and whether to record information about how programs perform with large trees. The first...
