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Workshop in Applied Phylogenetics | Bodega Bay, California | treethinkers.org Reviews
https://treethinkers.org
Bodega Bay, California
treethinkers.org
On building a small cluster | Workshop in Applied Phylogenetics
http://treethinkers.org/on-building-a-small-cluster
On building a small cluster. Treethinkers reader Nick left a comment on one of my earlier posts asking for some details about the cluster that I built for my lab. I’ll do that with this post. I’ll start by outlining some information about the cluster, list the specific parts I used (although note that this was two years ago, so good choices would likely be different today), and then give a couple of general thoughts on building and maintaining your own cluster. Shuttle SH67H3 Barebones PC. Some spare bac...
Tutorials | Workshop in Applied Phylogenetics
http://treethinkers.org/tutorials
Workshop in Applied Phylogenetics. Bodega Bay, California. Data Visualization in R. Divergence Time Estimation using BEAST. Evolution of Discrete Binary Traits in BayesTraits. Lineage diversification in R. Morphological Evolution in R. Phylogenetic Inference using MrBayes v3.2. RevBayes: Relaxed Clocks & Calibrated Time Trees. State-dependent diversification of traits. Leave a Reply Cancel reply. Your email address will not be published. Required fields are marked *. You may use these.
UPDATE: Must read papers for graduate students | Workshop in Applied Phylogenetics
http://treethinkers.org/update-must-read-papers-for-graduate-students
UPDATE: Must read papers for graduate students. Following up on my previous post. Here is the list of ‘Must Read’ papers in phylogenetics that were suggested on Twitter. I think that this is a great start, even though it is missing some classics and some important topics (divergence time estimation, for example). Thanks to everyone for chipping in with their thoughts and thanks again to Matt Hahn and Matt Pennell for getting the conversation started. 3), 384 397. Felsenstein, J. (1985). Confidenc...Felse...
TreeThinkers | Workshop in Applied Phylogenetics | Bodega Bay, California
http://treethinkers.org/blog
The relationship between prior sensitivity and extinction probabilities in BAMM. By Brian R. Moore, Sebastian Höhna, Michael R. May, Bruce Rannala, and John P. Huelsenbeck. 2016) explored the statistical behavior of BAMM (Rabosky, 2014). One of the pathologies demonstrated in our paper is the extreme prior sensitivity. The prior sensitivity issue with BAMM, although it uniquely conceals. BAMM (Rabosky, 2014) attempts to estimate: (1) the number and location of diversification-rate shifts, and; (2) the di...
New Bayesian methods for inferring rates of lineage diversification! | Workshop in Applied Phylogenetics
http://treethinkers.org/new-bayesian-methods-for-inferring-rates-of-lineage-diversification
Just a quick update on some recent work—by. The marvelous Mike May and sensational Sebastian Höhna—that we’re very excited about in the Moore lab. Each of the events is described by a separate compound Poisson process (CPP) model,. Where the waiting times between each event are exponentially distributed with event-specific rate parameters. The magnitude of each event is drawn from an event-specific prior distribution. Parameters of the model are then estimated using a reversible-jump Markov chain...Where...
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Teaching | The Mahler Lab
https://mahlerlab.com/teaching
Evolution, Herpetology, Comparative Methods, Natural History. In Winter 2016, I’ll teach a class entitled Diversity of Amphibians and Reptiles (EEB384H1S) at the University of Toronto. Stay tuned for more about this course! From 2012-2014, I taught at the annual Workshop in Applied Phylogenetics. And tutorials ( 1. New AmNat paper out today! June 17, 2016. Welcome to the New Mahler Lab News Page! May 18, 2016. Department of Ecology and Evolutionary Biology. 25 Willcocks Street, 3031.
Links - Vicente García-Navas
http://vicentegarcianavas.weebly.com/links.html
Where you can find me. Department of Intregrative Ecology. Conservation and Evolutionary Genetics. C Vilà Lab. Institute of Evolutionary Biology and Environmental Studies. The Evolution and Genetics of Life, Love and Death. My ORCID account; B-9372-2011. My author ID in SCOPUS. Links to useful and interesting websites, and blogs I use to read. Comprehensive information portal about grasshopper species. In Switzerland and rest of Europe (. Tree of Life Web Project. A mailing list for asking about, discuss...
Teaching | The Thomson Lab
http://thomsonlab.org/teaching
College of Natural Sciences. Zoology 480 – Evolutionary Biology. Zoology 780/781 – Foundations of Evolution and Ecology I and II (co-taught with Floyd Reed. Botany/Zoology 670 – Scientific Teaching Tools for Active Learning (co-taught with Kasey Barton. Bodega Bay Phylogenetics Workshop. Phylogenetics Workshop for 2013 HIMB Pauley Program. Deprecated; undergoing replacement by Treethinkers. Evolution Teaching Activities for Undergraduates. New paper highlighted in Molecular Ecology. 2016 The Thomson Lab.
Courses | Moore Lab
http://phylolab.org/courses
Biodiversity and the Tree of Life. Phylogenetics, Speciation, and Macroevolution. Leads the computer-lab component the course, where students apply the theory covered in lectures to now learn how to perform analyses of nucleotide sequence datasets using cutting-edge statistical phylogenetic methods. Principles of Microevolution and Macroevolution. Teaches students how to apply the methods from lecture to make inferences from real (generally their own) data. Wellcome Trust/EMBL/EBI Advanced Course on Comp...
People | Moore Lab
http://phylolab.org/people
Emily recently joined the Phylo Lab (Welcome Emily! She is a third-year undergraduate student majoring in biological sciences. Emily fell in love with phylogenetics as a student in BIS 2C (which shows impeccable taste), and is combining this new love with her old passion for human health by helping Jay with a project exploring "phylodynamic" models used to study viral evolution. We are also hoping to convert her to a coffee drinker. Traveler. Artist. Tea Enthusiast. Fighter, dancer, writer, musician.
UC Davis: Center for Population Biology
http://cpb.ucdavis.edu/Workshops.html
Skip directly to: Main page content. Center for Population Biology (CPB). Message from the Director. Ecology and Evolution Seminar Series. UC Davis Seminars and Events. University of California, Davis. Davis, CA 95616. Pop Bio Cohort Olympics: 2007 - 2010. (S. Macey). The CPB graduate student research workshop (aka Proutfest, in honor of Professor Emeritus Tim Prout. Will take place on November 21, 2015. Bodega Marine Laboratory Phylogenetics Workshop: http:/ treethinkers.org/. March 7-15, 2015). Using P...
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TreeThinker.org – Empowering DIY Renewable Technology
Empowering DIY Renewable Technology. Dedicated to giving people the knowledge and skills to create small scale renewable technology at home. Blog – Renewable Technology Blog. Workshops – DIY Renewable Technology. Find out more about why we do what we do in the About TreeThinker. Create a website or blog at WordPress.com. Blog – Renewable Technology Blog. Workshops – DIY Renewable Technology. Renewable Technology Siting Analysis.
TreeThinker | Sustainable design News
July 22, 2015. Wood-be computer chip contender. A new kind of computer chip has been developed which uses biodegradable wood instead of silicon. It has been developed by a group led by engineering professor Zhenqiang (Jack) Ma at the University of Wisonsin. The chip uses wood to replace the silicon used for the chips’ base, though silicon is still used for the components this is a reduction in silicon of about 95%. Follow Blog via Email. Of follow us on Twitter. Wood-be computer chip contender.
dechronization
Monday, June 6, 2011. Applications for our r-workshop are still being accepted - please apply by June 15! If you are interested please submit your CV along with a short (maximum 1 page) description of your research interests, background, and reasons for taking the course. Admission is competitive, and the best applications come from students with data sets to analyze. International applicants are welcome. Applications should be submitted online at http:/ bit.ly/liqVQ7. By 15 June 2011. Luke J. Harmon.
Workshop in Applied Phylogenetics | Bodega Bay, California
Workshop in Applied Phylogenetics. Bodega Bay, California. This site provides logistical information and course content for the annual Bodega Applied Phylogenetics Workshop an intensive, week-long graduate course offered each Spring by the University of California, Davis at the beautiful Bodega Marine Lab. 2015 Workshop in Applied Phylogenetics. See the 2015 workshop page. For more information and instructions to apply. New Bayesian methods for inferring rates of lineage diversification!
智森企业管理顾问有限公司 Welcome to TreeThinking
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Tree Thoughts for Christians Seeking True Rest
Being IN Christ can never be replaced by doing FOR Christ.". Besides, it's exhausting. Choosing the Lamb of God Over Barabbas. On Feb 12, 2014 in Articles. Even now, after nineteen centuries of Christ’s influence have modified the popular ideals, what chance have they? Are the popular ‘heroes’ of Christian nations saints, teachers, lovers of men, in whom their Christ-likeness is the thing venerated? Better be condemned with Jesus than adopted with Barabbas.”. Psalm 127:1 and 1 Cor. 3:11-23. You see how i...
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