iobio.io
Blog · iobio
http://iobio.io/blog.html
BY Alistair Ward ON Nov 3, 2016. What pathogenic variants do we know? BY Chase Miller ON Nov 2, 2016. IOBIO Now in Galaxy. Bamiobio and vcf.iobio have been integrated into galaxy. BY Alistair Ward ON Sep 22, 2016. Geneiobio version 2.1. A new version of gene.iobio is now available. BY Alistair Ward ON Sep 20, 2016. Query the origin of sequencing data. BY Alistair Ward ON Aug 3, 2016. What are bookmarks and why should I use them? BY Alistair Ward ON Jun 29, 2016. Web dev position available. Why Am I Sick?
iobio.io
Developers · iobio
http://iobio.io/developers.html
Developed in the Marth Lab by.
taxonomer.iobio.io
taxonomer.iobio Sample Datasets
http://taxonomer.iobio.io/info.html
Taxonomer is a kmer-based ultrafast metagenomics tool for assigning taxonomy to sequencing reads from both clinical and environmental samples. Taxonomer enables simultaneous microbial detection and human transcript quantification within a clinically meaningful timeframe (i.e. minutes). Taxonomer supports nucleotide and protein-based pathogen detection and phylogenetic classification using DNA and RNA sequencing data in a single integrated algorithmic framework. Taxonomer results are i...RNA-Seq data of a...
announce.list.galaxyproject.org
Galaxy Announcements List Archive - [galaxy-announce] Galaxy Admin Training: November 7-11, Salt Lake City
http://announce.list.galaxyproject.org/galaxy-announce-Galaxy-Admin-Training-November-7-11-Salt-Lake-City-tp4639352.html
Galaxy Announcements List Archive. Only in this topic. Galaxy-announce] Galaxy Admin Training: November 7-11, Salt Lake City. Open this post in threaded view. Report Content as Inappropriate. Galaxy-announce] Galaxy Admin Training: November 7-11, Salt Lake City. For Galaxy Admin Training 2016. Ends in one week, on Monday, September 19. Galaxy Admin Training 2016. Is a weeklong event offering basic and advanced sessions. It will be held in Salt Lake City, Utah, November 7-11, 2016, the week before. Depart...
iobio.io
Applications · iobio
http://iobio.io/applications.html
These are our full applications ready for use. Improvements? A web app for investigating potential disease-causing variants. An ultra fast metagenomics classification and analysis app. An alignment data inspector tool that quickly samples bam files and visualizes a series of metrics. An variant data inspector tool that quickly samples vcf files and visualizes a series of metrics. Here are some ideas we have explored but haven't turned into full polished apps. Developed in the Marth Lab by.
iobio.io
Pacbio Alignments In Bam.iobio · iobio
http://iobio.io/2015/04/15/pacbio-alignments-in-bam.iobio
Pacbio Alignments In Bam.iobio. The Schatz lab just posted some pacbio bam files. A quick look shows a few interesting things, such as the read length looks like it clusters below 5k, but has consistent longer reads all the way out to 30k. Check out the rest in bam.iobio. BY Alistair Ward ON Nov 3, 2016. What pathogenic variants do we know? BY Chase Miller ON Nov 2, 2016. IOBIO Now in Galaxy. Bamiobio and vcf.iobio have been integrated into galaxy. BY Alistair Ward ON Sep 22, 2016.
iobio.io
New app gene.iobio · iobio
http://iobio.io/2015/08/04/gene.iobio_released
New app gene.iobio. We’ve been working on a new real-time interactive iobio analysis tool for the last few months and today are excited to officially release gene.iobio. Is designed to help medical and clinical researchers hunt for disease-causing genetic variants through a combination of real-time genomic data analysis and intuitive visualization. The quickest way to get an idea of the features and functionality is to watch the intro screencast. Quite professionally voiced over by our own Alistair Ward!
iobio.io
Install Locally Via Docker · iobio
http://iobio.io/2015/07/05/install-locally-via-docker
Install Locally Via Docker. If you have a local directory, or locally mounted network directory, which contains bam files you would like to visualize inside bam.iobio, you can spin up the whole stack of bam.iobio via docker-compose. First create a directory and inside which create a docker-compose.yaml that looks something like this:. Or using a shell script without docker-compose. Docker run - name data. D nginx docker run - name bamiobio. Link data:data -p 8000:80. E PUB HTTP PORT. E PUB HTTP PORT.
iobio.io
About us · iobio
http://iobio.io/about.html
We are a team of developers in the Marth lab at the Center for Genetic Discovery. At the University of Utah. If you'd like to give suggestions or collaborate on an app in your research area, contact us at iobioproject at gmail dot com. Developed in the Marth Lab by.
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