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ORNL UniFam

Pipeline to Annotate Proteins. UniFam Protein Annotation Pipeline. UniFam Protein Annotatoin Pipeline. A pipeline to annotate proteins with newly developed protein family database (UniFam) and to predict metabolic pathways for a genome is made available to users. UniFam. Is a new protein family database based on proteins in UniProt including SwissProt and Trembl. It annotates proteins on the full sequence level instead of on the domain level.

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Pipeline to Annotate Proteins. UniFam Protein Annotation Pipeline. UniFam Protein Annotatoin Pipeline. A pipeline to annotate proteins with newly developed protein family database (UniFam) and to predict metabolic pathways for a genome is made available to users. UniFam. Is a new protein family database based on proteins in UniProt including SwissProt and Trembl. It annotates proteins on the full sequence level instead of on the domain level.
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ORNL UniFam | unifam.omicsbio.org Reviews

https://unifam.omicsbio.org

Pipeline to Annotate Proteins. UniFam Protein Annotation Pipeline. UniFam Protein Annotatoin Pipeline. A pipeline to annotate proteins with newly developed protein family database (UniFam) and to predict metabolic pathways for a genome is made available to users. UniFam. Is a new protein family database based on proteins in UniProt including SwissProt and Trembl. It annotates proteins on the full sequence level instead of on the domain level.

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unifam.omicsbio.org unifam.omicsbio.org
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ORNL UniFam

http://unifam.omicsbio.org/downloads

Pipeline to Annotate Proteins. UniFam annotation pipeline v1.0.0 Download. UniFam prok DataBase Download. UniFam euk DataBase Download. Pathway inference reports for finished prokaryotic genomes Download Data. Pathway inference reports for draft prokaryotic genomes Download Data. Sample input of protein sequences Sample Input Download. Sample input of a genome’s contigs Sample Input Download. Sample output of protein annotations in flat format SampleOutput Download.

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ORNL UniFam

http://unifam.omicsbio.org/job

Pipeline to Annotate Proteins. Please enter your name. Please enter you email, used for tracking your job. Please enter your school or organization. Prokaryotic Isolate Genome (fna, DNA sequence). Prokaryotic Metagenome (fna, DNA sequence). Prokaryotic Proteins (faa, Protein sequence). Eukaryotic Proteins (faa, Protein sequence). Unknown-Superkingdom Proteins (faa, Protein sequence). Project name, used to prepend file names. Sequence coverage of the aligned regioin in HMM search.

3

ORNL UniFam

http://unifam.omicsbio.org/locate

Pipeline to Annotate Proteins. Have you previously submitted job with us? If yes, please enter your job id that was emailed to you in the below field and click the button. If you havent' submitted a previous job with us, you can submit one by clicking here. We'll try to locate your job. Hang tight! Fetch the Job Details.

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omicsbio.org omicsbio.org

Publications led by collaborators Archives - Omics Bio

http://www.omicsbio.org/category/publications/publications-led-by-collaborators

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. Category Archives: Publications led by collaborators. Publications in which we are co-authors. Publications led by collaborators. Elevated temperature alters proteomic responses of individual organisms within a biofilm community. July 23, 2014. Mosier, A. C., Zhou Li. Thomas, B. C., Hettich, R. L., Chongle Pan. Banfield, J. F. Doi:10.1038/ismej.2014.113 (2014). [ Link to Article. June 16, 2014. May 22, 2014.

omicsbio.org omicsbio.org

metabolomics Archives - Omics Bio

http://www.omicsbio.org/tag/metabolomics

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. Protocol: how to extract metabolites from fungal and plant samples. October 6, 2014. For the step #6:. Single-use sterile and non-pyrogenic latex-free syringes, 0.01 1 ml Tuberkulin Omnifix-F (B.Braun Melsungen AG, cat. no. 9161406V). 1: Harvest cells and then rapidly freeze the cells in liquid nitrogen. Note: Take care that tissues stay well frozen during homogenization; discard any samples that start to thaw...

omicsbio.org omicsbio.org

Sitemap - Omics Bio

http://www.omicsbio.org/sitemap

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. A list of our publications on scientist journals. More informal and timely communication of our work. Backgrounds and accomplishments of our lab members. Overview of our research projects and facilities. Algorithms and web services developed in our lab. Sigma: http:/ sigma.omicsbio.org. Omega: http:/ omega.omicsbio.org. UniFam: http:/ unifam.omicsbio.org. Sipros: http:/ sipros.omicsbio.org. October 9, 2014.

omicsbio.org omicsbio.org

Blog Archives - Omics Bio

http://www.omicsbio.org/category/blog

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. Protocol: how to extract metabolites from fungal and plant samples. October 6, 2014. For the step #6:. Single-use sterile and non-pyrogenic latex-free syringes, 0.01 1 ml Tuberkulin Omnifix-F (B.Braun Melsungen AG, cat. no. 9161406V). 1: Harvest cells and then rapidly freeze the cells in liquid nitrogen. Note: Take care that tissues stay well frozen during homogenization; discard any samples that start to thaw...

omicsbio.org omicsbio.org

Publications led by our lab Archives - Omics Bio

http://www.omicsbio.org/category/publications/publications-led-by-our-lab

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. Category Archives: Publications led by our lab. Publications in which we are the first author and/or the corresponding author. Publications led by our lab. Functional Phylogenomics Analysis of Bacteria and Archaea using Consistent Genome Annotation with UniFam. October 9, 2014. Kora, G., Tae-Hyuk Ahn. Hyatt, D. and Chongle Pan. 14:207. doi: 10.1186/s12862-014-0207-y (2014). [ Link to Article. September 29, 2014.

omicsbio.org omicsbio.org

FAQ Archives - Omics Bio

http://www.omicsbio.org/category/blog/faq

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. FAQ: is your lab a dry lab or a wet lab? October 2, 2014. FAQ: can we collaborate? October 1, 2014. Omics Technologies for Biological Sciences. Omega for genome assembly. Sigma for biosurveillance and variant calling. UniFam for genome annotation. Omega for transcript assembly. Sigma for transcript quantification. Sipros for protein identification. ProRata for protein quantification. Publications led by our lab.

omicsbio.org omicsbio.org

Proteomics Archives - Omics Bio

http://www.omicsbio.org/tag/proteomics

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. Publications led by our lab. Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. July 26, 2014. Yao, Q., Justice, N. B., Tae-Hyuk Ahn. Xu, D, Hettich, R. L., Banfield, J. F. and Chongle Pan. 4405, doi:10.1038/ncomms5405 (2014). [ Link to Article. Publications led by collaborators. July 23, 2014. Mosier, A. C., Zhou Li. Banfield, J. F. Publicatio...

omicsbio.org omicsbio.org

Lab Members - Omics Bio

http://www.omicsbio.org/people/lab-members

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. PhD in Computer Science, Virginia Tech, Blacksburg, VA. MS in Electrical and Computer Engineering, Northwestern University, Evanston, IL. BS in Electrical Engineering, Yonsei University, Seoul, Korea. Publications from this lab:. Ahn TH, Chai J, Pan C. Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance. 4405, doi:10.1038/ncomms5405 (2014). Publications from this lab:. Chai J...

omicsbio.org omicsbio.org

Lab Alumni - Omics Bio

http://www.omicsbio.org/people/lab-alumni

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. PhD in Computer Science, University of Georgia, Athens, GA. MS in Computer Software and Theory, Hohai University, Nanjing, China. BS in Computer Science and Technology, Hohai University, Nanjing, China. Publications from this lab:. Wang, Y., Kora, G., Bowen, B. P. and Pan, C. MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics. 4405, doi:10.1038/ncomms5405 (2014). Haider, B....

omicsbio.org omicsbio.org

Transcriptomics Archives - Omics Bio

http://www.omicsbio.org/tag/transcriptomics

Publications led by our lab. Publications led by collaborators. Publications on Google Scholar. Publications led by collaborators. Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics. May 22, 2014. Yang, S., Chongle Pan. Hurst, G. B., Dice, L., Davison, B. H. and Brown, S. D. 246, doi:10.3389/fmicb.2014.00246 (2014). [ Link to Article. Publications led by our lab. May 25, 2008. Molecular and cellular proteomics. Omega for genome assembly. Public...

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ORNL UniFam

Pipeline to Annotate Proteins. UniFam Protein Annotation Pipeline. UniFam Protein Annotatoin Pipeline. A pipeline to annotate proteins with newly developed protein family database (UniFam) and to predict metabolic pathways for a genome is made available to users. UniFam. Is a new protein family database based on proteins in UniProt including SwissProt and Trembl. It annotates proteins on the full sequence level instead of on the domain level.

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