vanted.ipk-gatersleben.de

bioinfowiki.mpg.de

Microarray, SAGE, & other Gene Expression - BISS Wiki

http://bioinfowiki.mpg.de/index.php/Microarray,_SAGE,_&_other_Gene_Expression

Microarray, SAGE, and other Gene Expression. A software system for evaluation of hybridisation experiments. Tiling Array Express (At-TAX). Is a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Clustering using A Priori Information via Unsupervised decision trees. Design 2 Color MicroArrays contains a few R-scripts, mainly the function optimize.MA.design which builds upon the daMA package. Gene Co-expression Analysis Toolbox.

rimas.ipk-gatersleben.de

RIMAS: AFL/B3 maturation

http://rimas.ipk-gatersleben.de/AFLB3maturation.htm

Regulatory Interaction Maps of Arabidopsis Seed Development. LEC1/AFL-B3 factors and maturation gene control. LEC1/AFL-B3 factors and interactions with phytohormone metabolism. Epigenetic control of LEC1/AFL-B3 factors. Last Update: 10.06.10. Ihr Browser kann leider keine eingebetteten Frames anzeigen: Sie können die eingebettete Seite über den folgenden Verweis aufrufen: AFLB3LEC1 Network Pathway. 2008) LEC1 also up-regulates the transcription of several oleosin. 2008) As regulator of lipid biosynthetic...

rimas.ipk-gatersleben.de

RIMAS: AFL/B3 network

http://rimas.ipk-gatersleben.de/AFLB3network.htm

Regulatory Interaction Maps of Arabidopsis Seed Development. LEC1/AFL-B3 factors and maturation gene control. LEC1/AFL-B3 factors and interactions with phytohormone metabolism. Epigenetic control of LEC1/AFL-B3 factors. Last Update: 10.06.10. Ihr Browser kann leider keine eingebetteten Frames anzeigen: Sie können die eingebettete Seite über den folgenden Verweis aufrufen: AFLB3LEC1 Network Pathway. In Arabidopsis four genetic loci, LEC1. 2005, Meinke et al. 1994, Stone et al. 2006, To et al.

rimas.ipk-gatersleben.de

RIMAS: Introduction

http://rimas.ipk-gatersleben.de/index.htm

Regulatory Interaction Maps of Arabidopsis Seed Development. LEC1/AFL-B3 factors and maturation gene control. LEC1/AFL-B3 factors and interactions with phytohormone metabolism. Epigenetic control of LEC1/AFL-B3 factors. Last Update: 10.06.10. EC2 which share the highly conserved B3. RIMAS network nomenclature is based on the agreed-upon convention for the display and handling of biological regulatory networks designated as Systems Biology Graphical Notation. Le Novère et al. 2009, Nature Biotech. RIMAS i...

bioinfowiki.mpg.de

Metabolome Databases & Analysis Tools - BISS Wiki

http://bioinfowiki.mpg.de/index.php/Metabolome_Databases_&_Analysis_Tools

Metabolome Databases and Analysis Tools. For the quantitative analysis of gas chromatography - mass spectrometry (GC-MS) based metabolite profiling experiments. A TagFinder based high throughput tool for the mass isotope correction of GC-MS flux profiling experiments. Visualization and analysis of large-scale transcript and metabolite profile datasets. Pathway Visualization and Editing System. Online Bioinformatics Resources Collection. Visualization and Analysis of Networks containing Experimental Data.

dev.transplantdb.eu

Services | transPLANT

http://dev.transplantdb.eu/services

Skip to main content. The transPLANT logo with link to the homepage. Assembly decision support system. Tools for virtual plant breeding. Trans-national infrastructure for plant genomic science. The development and maintenance of the following services is funded through the transPLANT project:. Institut National de la Recherche Agronomique. Wheat3BMine, a data warehouse dedicated to wheat chromosome 3B, available at: http:/ urgi.versailles.inra.fr/Wheat3BMine. Http:/ vanted.ipk-gatersleben.de/. Http:/ urg...

metamapp.blogspot.com

MetaMapp- visualizing metabolomics networks: Metabolic Networks

http://metamapp.blogspot.com/p/metabolic-networks.html

MetaMapp- visualizing metabolomics networks. MetaMapp is a novel way to map metabolomics datasets into network graphs of biological significance. Tools for metabolic Networks Construction and Analysis. Nobody Alone, Networks everywhere. A brief description of the existing networks and tools. Getting Connected :- Networks everywhere. Networks can be analyzed in terms of Node Connectvity, Modules and motifs Identification, Clustering Coefficient and Networks Statistics. 1 Large Scale Datasets :-. I would l...

rimas.ipk-gatersleben.de

RIMAS: AFL/B3 hormone

http://rimas.ipk-gatersleben.de/AFLB3hormones.htm

Regulatory Interaction Maps of Arabidopsis Seed Development. LEC1/AFL-B3 factors and maturation gene control. LEC1/AFL-B3 factors and interactions with phytohormone metabolism. Epigenetic control of LEC1/AFL-B3 factors. Last Update: 10.06.10. Ihr Browser kann leider keine eingebetteten Frames anzeigen: Sie können die eingebettete Seite über den folgenden Verweis aufrufen: AFLB3LEC1 Hormones Pathway. 2004, Nambara et al. 2000, Suzuki and McCarty 2008, Umezawa et al. 2006, Wang et al. 2008) Via direct regu...

csbg.cnb.csic.es

Tools for the functional interpretation of metabolomic experiments - Computational Systems Biology Group

http://csbg.cnb.csic.es/metab_rev

Tools for the functional interpretation of metabolomic experiments. Approaches (e.g genomics. Seek to massively characterizing the molecular repertories of living systems. Among them, metabolomics. Tries to determine the set of metabolites in a given biological system. As metabolomic techniques develop and allow characterizing larger sets of metabolites, researchers need automatic methods to interpret their experimental results. We can classify these tools in two groups:. More information and links.