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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . Maswertz AT rug.nl or pieter&...

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bbmri | variantserver.com Reviews

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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . Maswertz AT rug.nl or pieter&...

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bbmri | variantserver.com Reviews

https://variantserver.com

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . Maswertz AT rug.nl or pieter&...

INTERNAL PAGES

variantserver.com

1

StructuralVariationPipeline – bbmri

http://www.variantserver.com/wiki/StructuralVariationPipeline

This page summaries the SV pipelines used in GoNL. Because of different coverage, the following software are used to call SVs from GoNL data. Pindel: Eric-Wubbo, Kai. DWAC-seq/1-2-3 SV: Victor, Slavik. Breakdancer: Jayne, Joep. GenomeSTRiP: Bob, Laurent. The following software are used to assemble reads to detect novel (large) insertions. PCR/chip validation is performed by Wigard, Johan. Pilot phase (Sep, Oct 2011). Production phase (Nov, Dec 2011). UMCG BAMs to be used for production calls.

2

DataConcordance – bbmri

http://www.variantserver.com/wiki/DataConcordance

Concordance aggregation using home-made scripts. Reporting using R scripts. Results - GoNL Pilot. This page summarizes the methods and results of the concordance checks between the following data sets:. All data sets were either generated or converted to VCF files aligned on the build Hg19 of the Human Reference Genome:. See GoNL Immunochip Data Preparation. About how the Immunochip data was processed. About how to liftover a VCF file from one reference to another. Was used. More specifically:. The outpu...

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bbmri

http://www.variantserver.com/wiki

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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TitleIndex – bbmri

http://www.variantserver.com/wiki/TitleIndex

2011 10 13 SV group meeting. GoNL Immunochip Data Preparation. RNA blood sampling age distribution per biobank plot. Gene exon transcript count. Gene exon transcript count. Last modified on Apr 20, 2015 8:51:57 PM. Download in other formats:. Powered by Trac 1.0.7. Visit the Trac open source project at. Http:/ trac.edgewall.org/.

5

ChipBasedQcPipeline – bbmri

http://www.variantserver.com/wiki/ChipBasedQcPipeline

Protocol for comparison between sequencing (VCF) and chip data. In this project, we will establish an infrastructure and will cross-check the genotypic data generated by BGI with the data already available GWA scans (DNA chips). Yurii, Lennart, Elisa. End Sep 2010 - end Dec 2010. BI/data manager/programmer at 0.75 fte (the same as the one on MendelianQcPipeline. Experienced supervisor at 0.1 fte (the same as the one on MendelianQcPipeline. Availability of VCF data. Other projects depending on this. What ...

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variantserver.com

bbmri

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . Maswertz AT rug.nl or pieter&...

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