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Posted on August 13, 2015. We are filling three open positions. Find more details on the OPPORTUNITIES page. read more. Farewell to Noemi and Andrés. Posted on August 12, 2015. We’re saying goodbye to Noemi and wish her all the best for the second part of her PhD in Umeå, Sweden! Andrés will go back to Argentina after a 3-months visit in the department - lots of luck! Current Opinion Review on Splicing and Temperature Signaling. Posted on August 07, 2015. Posted on July 29, 2015. Posted on July 27, 2015.

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Detlef Weigel

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Detlef Weigel

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Detlef Weigel

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Posted on August 13, 2015. We are filling three open positions. Find more details on the OPPORTUNITIES page. read more. Farewell to Noemi and Andrés. Posted on August 12, 2015. We’re saying goodbye to Noemi and wish her all the best for the second part of her PhD in Umeå, Sweden! Andrés will go back to Argentina after a 3-months visit in the department - lots of luck! Current Opinion Review on Splicing and Temperature Signaling. Posted on August 07, 2015. Posted on July 29, 2015. Posted on July 27, 2015.

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1 people

2 research

3 resources

4 papers

5 opportunities

6 about us

7 latest news

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people,research,resources,papers,opportunities,about us,latest news,job opportunities,link to opportunities,page,farewell to stefan,farewell to verena,news archive,upcoming events,subu's thesis defense,mph lecture hall,our research,our resources,seeds

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Weigelworld - Home | weigelworld.org Reviews

https://weigelworld.org

Posted on August 13, 2015. We are filling three open positions. Find more details on the OPPORTUNITIES page. read more. Farewell to Noemi and Andrés. Posted on August 12, 2015. We’re saying goodbye to Noemi and wish her all the best for the second part of her PhD in Umeå, Sweden! Andrés will go back to Argentina after a 3-months visit in the department - lots of luck! Current Opinion Review on Splicing and Temperature Signaling. Posted on August 07, 2015. Posted on July 29, 2015. Posted on July 27, 2015.

SUBDOMAINS

polymorph-clark20.weigelworld.org

POLYMORPH

Coding SNPs by Gene. SNPs Between Accessions (SBE). SNPs by Allele Frequency (SAF). Assay Development Formater (ADF). We provide this service ahead of publishing POLYMORPH. If you find this information useful then please cite:. Ossowski S, Fitz J, Warthmann N, Clark RM, Schneeberger K and Weigel D, personal communication. All data currently available on Ploymorph is published in:. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. 2007 Jul 20;317(5836):338-42.

polymorph.weigelworld.org

Welcome to POLYMORPH!

MPICao2010 - 80 Arabidopsis thaliana accessions. As the pilot of 1001 genomes project, we sequenced complete genome of 80 Arabidopsis thaliana accessions selected from 8 regions across Eurasia with paired end Illumina short reads. For more information on this project please visit the 1001 Genomes Project. This instance allows access to SNPs, small indels, structural variant indels and inversions, and highly diverged regions (HDRs). Please select the adequate entry in the menu Polymorphism Tools.

msqt.weigelworld.org

MSQT

MSQT - Multiple SNP Query Tool. MSQT is a SNP Query Tool. It was developed to make polymorphism information readily accessible and to assist researchers in selecting distinct sequence changes and developing SNP detection assays. learn more. The software is open source and available under the terms of the GNU General Public License (GPL). download. Monday, 2007-10-15 posted by Joffrey:. Version 0.7.3 released for download. It is highly recommended to update your installation. We released version 0.7&#...

lyrata.weigelworld.org

Arabidopsis lyrata Project -- WeigelWorld.org

Arabidopsis lyrata is a perennial, outbreeding, rosette-forming herb found between sea level and. Promoter sequences (1000 bp upstream of ATG (start codon) extracted from Arabidopsis lyrata. Annoation (A. lyrata v1.0, April 7, 2008). Click on table row to download sequence. An archive of all sequences is available here. This dataset was extracted by Ya-Long Guo. From the A. lyrata.

bioinformatics.weigelworld.org

Weigel World Bioinformatics Portal

MPI for Developmental Biology. Welcome to Weigel World Bioinformatics! This site aggregates the various bioinformatic tools and resources developed and hosted by WeigelWorld. Aka Department of Molecular Biology. At the Max Planck Institute for Developmental Biology. A leading provider of plant genomics information. A detailed description of our research program can be found on our main website. A Gbrowse instance of A. thaliana. Automated design of artificial microRNAs. Multiple SNP query tool.

gbrowse.weigelworld.org

MPICao2010: 2.193 kbp from Chr1:38,752..40,944

Help with this browser. Show my user ID. MPICao2010: 2.193 kbp from Chr1:38,752.40,944. Download Decorated FASTA File. Show 2.193 kbp. Protein Coding Gene Models. Protein Coding Gene Models. Show Active Tracks Only. Protein Coding Gene Models. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text]. Highlight feature(s) (feature1 feature2.). Highlight regions (region1:start.end region2:start.end).

guppy.weigelworld.org

Guppy database

Guppy database (Poecilia reticulata). Here databases for guppies (Poecilia reticulata) are available. Please select one of the following tables by clicking on it:. All Markers and Genetic Map. Hits on Medaka Genome. Hits on Tetraodon Genome.

wmd3.weigelworld.org

WMD3 - Web MicroRNA Designer

WMD3 - Web app for the automated design of artificial microRNAs. Before you use WMD3 for the first time! More information about miRNAs, design and application of amiRNAs and several guides on all the tools on this page can be found in the Help. Section. Cloning protocols are available in the Download. The artificial miRNA vectors pRS300 and pNW55 are available from Addgene. On their website, search for plasmids associated with the keyword "weigel". Proof of concept studies and other related publications:.

INTERNAL PAGES

weigelworld.org

1

Weigelworld - Papers

http://www.weigelworld.org/papers.html

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Genomes Consortium. Electronic address magnus nordborg gmi oeaw ac at. Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. Meyer R. C. Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles. Smith L. M. And Laitinen R. A. Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. Seymour D. K. Rowan B. A.

2

Weigelworld - Opportunities

http://www.weigelworld.org/opportunities.html

Become a member of the lab. Become a member of the lab. We are always looking for talented new members for our team. If you are interested in joining us as a postdoctoral fellow. Read more about current projects here. Our preferred way for PhD applications. Is through the institute’s PhD program. But we will also entertain direct applications. We expect that you have at least some lab experience, and that you can provide at least two letters of reference. For diploma or master students. We are looking fo...

3

Weigelworld - Home

http://www.weigelworld.org/index.php?id=1

ACD6 dependent hybrid necrosis in local population. Posted on September 05, 2016. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana read more. Swiadek M, Proost S, Sieh D, Yu J, Todesco M, Jorzig C, Rodriguez Cubillos AE, Plötner B, Nikoloski Z, Chae E, Giavalisco P, Fischer A, Schröder F, Kim ST, Weigel D, Laitinen RA. New Phytol. 2016 Sep 2. Farewell to Ezgi and Jorge. Posted on August 31, 2016. S lab at MPI-EVA as a postdoc. Graduation and farewell party!

4

Weigelworld - About Us

http://www.weigelworld.org/about-us.html

The long-term goal of our research is to understand both the molecular mechanisms. To this end, we are using both phenotype-first and genotype-first approaches to identify genetic variants. With a potential role in local, regional or global adaptation. Such studies benefit tremendously from knowledge about the genomes. Of other species, as well from a historical perspective that exploits ancient DNA. Methods to unlock the knowledge stored in herbaria. One of our lines of research, on fitness tradeoffs.

5

Weigelworld - Research

http://www.weigelworld.org/research

Please hover over the puzzle for more information. Our department at the Max Planck Institute is a great place for research at the interface of plant biology, developmental genetics and evolutionary genomics. Apart from scientific discoveries, training the next generation of leaders in the field is very important to us. Many former members have established successful careers, and several have won major scientific prizes and awards. The induction of flowering is a central event in the life cycle of plants...

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gzeller.net

Georg Zeller's homepage

http://www.gzeller.net/index.html

Computational Biologist at EMBL. Postdoc in Peer Bork's group. PhD studies both in Gunnar Rätsch's group. And Detlef Weigel's lab. On the Max Planck Campus, Tübingen, Germany. Undergraduate studies in biology and computer science at Uppsala University. Undergraduate training as a computational biologist at Tübingen University. From which I earned a Diplom in Bioinformatics (Master's equivalent). There, I also worked as a student researcher in Daniel Huson's group. Reviewer for Bioinformatics, PLoS One.

compbio.dundee.ac.uk

Current Group Members | The Barton Group | Bioinformatics Research | Division of Computational Biology | University of Dundee

http://www.compbio.dundee.ac.uk/people.html

About the Barton Group. Videos from the Group. Photos of Barton Group Events. Archive of Group News 1999-2013. Archive of Group News May 1994-1999. Google Scholar (Date order). Google Scholar (Citation order). Geoff Barton on twitter. PDF's of early Geoff Barton papers. Data Analysis Group Publications. All Barton Group Software and Databases. Multiple Sequence Alignment and Analysis. Protein Structure and Prediction. Sequence Analysis Tools and Databases. Utility Programs and legacy Databases. In her fr...

msqt.weigelworld.org

MSQT

http://msqt.weigelworld.org/screenshots.html

MSQT - Multiple SNP Query Tool. Screenshots of the MSQT Web Application. See MSQT in Action. Click on the thumbnails below to get high resolution images. MSQT/SBE, MSQT/Admin and MSQT/Alivie at a glance. The MSQT/SBE (SNPs Between Ecotypes) Module. This is the front end to query the dataset for SNPs between individuals or groups of individuals. MSQT/SBE provides a built-in alignment viewer, Alivie. MSQT/ADF (Assay Development Formatter) assist the user in developing SNP detection assays.

msqt.weigelworld.org

MSQT

http://msqt.weigelworld.org/downloads.html

MSQT - Multiple SNP Query Tool. Below is a list of all MSQT releases. October 15, 2007. Msqt-0.7.3.tar.gz. October 15, 2007. Msqt-0.7.3.md5. June 28, 2007. Msqt-0.7.2.tar.gz. June 28, 2007. Msqt-0.7.2.md5. June 26, 2007. Msqt-0.7.1.tar.gz. June 26, 2007. Msqt-0.7.1.md5. Is a project of Norman Warthmann, Joffrey Fitz and Detlef Weigel. www.weigelworld.org.

malooflab.phytonetworks.org

Julin Maloof | Maloof Lab

http://malooflab.phytonetworks.org/people/julin-maloof

ApE Feature Table Creator. Tissue-Specific Gene Expression in Tomato. Brassica rapa v1.2. Brassica rapa v1.5. Solanum lycopersicum v2.40. Solanum lycopersicum v2.50. Group Meeting Winter 2017. Group Meeting - Fall 2016. Group Meeting - Summer 2016. Julins Photo Gallery (non science). Enter 'Edit Mode' and add sidebar content here.]. More info for Julin Maloof:. Enter 'Edit Mode' and add sidebar content here.]. University of California, Davis. University of California, Davis. Ranjan A, Budke JM, Rowland S...

msqt.weigelworld.org

MSQT

http://msqt.weigelworld.org/docs.html

MSQT - Multiple SNP Query Tool. You find here installation guides and user manuals. Installation Guide for Debian like Linux Distributions. June 12, 2007. Installation Guide Mac OSX. June 12, 2007. June 13, 2007. Msqt user manual.html. June 13, 2007. Msqt admin manual.html. Is a project of Norman Warthmann, Joffrey Fitz and Detlef Weigel. www.weigelworld.org.

msqt.weigelworld.org

MSQT

http://msqt.weigelworld.org/index.html

MSQT - Multiple SNP Query Tool. MSQT is a SNP Query Tool. It was developed to make polymorphism information readily accessible and to assist researchers in selecting distinct sequence changes and developing SNP detection assays. learn more. The software is open source and available under the terms of the GNU General Public License (GPL). download. Monday, 2007-10-15 posted by Joffrey:. Version 0.7.3 released for download. It is highly recommended to update your installation. We released version 0.7&#...

msqt.weigelworld.org

MSQT

http://msqt.weigelworld.org/about.html

MSQT - Multiple SNP Query Tool. MSQT is a project of Norman Warthmann, Joffrey Fitz and Detlef Weigel. Concept, database design and proof of concept by Norman Warthmann. Realization, application design and programming by Joffrey Fitz. If you find this information useful then please cite:. Norman Warthmann, Joffrey Fitz and Detlef Weigel. MSQT for choosing SNP assays from multiple DNA alignments. 2007; doi: 10.1093/bioinformatics/btm428. This is MSQT Version 0.7.1 (Tue Jun 12 2007).

ajay-microrna.blogspot.com

microRNA: May 2011

http://ajay-microrna.blogspot.com/2011_05_01_archive.html

Tuesday, 17 May 2011. Quantitative Stem-Loop RT-PCR for Detection of MicroRNAs. Methods Mol Biol. Real-time quantification of microRNAs by stem-loop RT-PCR. 2005 Nov 27;33(20):e179. Tuesday, 10 May 2011. Artificial microRNA (amiRNA) technology is a novel tool in reverse genetic research for discovering or validating gene functions in plants. A convenient cloning strategy has been developed to construct plant amiRNA vectors based on lacO. AmiRNA vectors – Blue–white screening – lac. Saturday, 7 May 2011.

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weigelworld.org

Weigelworld - Home

Posted on August 13, 2015. We are filling three open positions. Find more details on the OPPORTUNITIES page. read more. Farewell to Noemi and Andrés. Posted on August 12, 2015. We’re saying goodbye to Noemi and wish her all the best for the second part of her PhD in Umeå, Sweden! Andrés will go back to Argentina after a 3-months visit in the department - lots of luck! Current Opinion Review on Splicing and Temperature Signaling. Posted on August 07, 2015. Posted on July 29, 2015. Posted on July 27, 2015.

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