wiki.biouml.org

BioUML wiki - BioUML platform

Welcome to BioUML wiki! Now it is the main web site for BioUML platform. Currently we have 699 articles. Try BioUML web edition. Test server (free) http:/ server.biouml.org/bioumlweb/. Commercial server (free and licensed) http:/ genexplain-platform.com/bioumlweb/. Server for Colon cancer project. Http:/ ge.mimomics.it/bioumlweb/. Colon Cancer Public datasets) (SysCol project). From workshop "From virtual cell to virtual human and virtual patient". To edit this wiki you have to register in BioStore.

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Welcome to BioUML wiki! Now it is the main web site for BioUML platform. Currently we have 699 articles. Try BioUML web edition. Test server (free) http:/ server.biouml.org/bioumlweb/. Commercial server (free and licensed) http:/ genexplain-platform.com/bioumlweb/. Server for Colon cancer project. Http:/ ge.mimomics.it/bioumlweb/. Colon Cancer Public datasets) (SysCol project). From workshop From virtual cell to virtual human and virtual patient. To edit this wiki you have to register in BioStore.

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BioUML wiki - BioUML platform | wiki.biouml.org Reviews

https://wiki.biouml.org

Welcome to BioUML wiki! Now it is the main web site for BioUML platform. Currently we have 699 articles. Try BioUML web edition. Test server (free) http:/ server.biouml.org/bioumlweb/. Commercial server (free and licensed) http:/ genexplain-platform.com/bioumlweb/. Server for Colon cancer project. Http:/ ge.mimomics.it/bioumlweb/. Colon Cancer Public datasets) (SysCol project). From workshop "From virtual cell to virtual human and virtual patient". To edit this wiki you have to register in BioStore.

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wiki.biouml.org

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Project - BioUML platform

http://wiki.biouml.org/index.php/Project

This page or section is a stub. Please add more information. Accessing a project journal. In the repository pane the default project structure is seen(encompassed by dashed line). A project in BioUML. Is a group of folders which contains data and history for the current research. The default project structure:. Data - collection with all imported and result data. Data elements can be grouped by sub-collections (such as Files, Tables, Tracks, Diagrams, etc.). Creating a new project.

2

Workflow - BioUML platform

http://wiki.biouml.org/index.php/Workflows

In bioinformatics can be defined as a series of computational or data manipulation steps. To compose and execute such sequences a variety of special workflow management systems. Has been developed. All such systems are based on an abstract representation of how a computation proceeds in the form of a directed graph. In BioUML the workflow is a special. Type, so you can edit it using the diagram document. Creating your own workflows. Six steps to compose a simple workflow. Specifying the input file(s),.

3

Features - BioUML platform

http://wiki.biouml.org/index.php/Features

The main BioUML features (shared by all editions) are listed below. The following systems biology standards are applied in BioUML:. Systems Biology Markup Language. BioUML supports SBML Level 1 version 1-2; Level 2 versions 1-4; Level 3 version 1. BioUML is the only simulator that has passed all the tests from the SBML test suite version 2.0 (test details). Systems Biology Graphic Notation. BioUML supports Process Diagrams as they are defined by SBGN version 1.0. BioUML supoorts data in PSI-MI format.

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Category:Analyses - BioUML platform

http://wiki.biouml.org/index.php/Category:Analyses

This category lists analyses which can be performed in BioUML. If you want to develop your own analysis, check analysis method development. This category has the following 20 subcategories, out of 20 total. Binding regions (analyses group). DAE models (analyses group). Molecular networks (analyses group). Pages in category "Analyses". The following 200 pages are in this category, out of 245 total. Previous 200) ( next 200. Adaptive simulated annealing (analysis). Add expression values (analysis). Composi...

5

Download - BioUML platform

http://wiki.biouml.org/index.php/Download

BioUML platform is tightly integrated with BioStore. Markeptlpace to form a community. To download the latest version of BioUML workbench. And BioUML Development Kit. Go to https:/ bio-store.org/biostore/. The Biostore start page will open in your browser. If you are a registered BioStore user, click on the Login. Link either in the main pane or in the menu area. Then go to step 6. If you haven't got an account with BioStore, click on the Register. Link in the main pane or on the Registration. Once logge...

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BioUML wiki - BioUML platform

Welcome to BioUML wiki! Now it is the main web site for BioUML platform. Currently we have 699 articles. Try BioUML web edition. Test server (free) http:/ server.biouml.org/bioumlweb/. Commercial server (free and licensed) http:/ genexplain-platform.com/bioumlweb/. Server for Colon cancer project. Http:/ ge.mimomics.it/bioumlweb/. Colon Cancer Public datasets) (SysCol project). From workshop "From virtual cell to virtual human and virtual patient". To edit this wiki you have to register in BioStore.

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