wiki.cytoscape.org

Welcome - Cytoscape Wiki

Revert to this revision. Is an open source platform for network data integration, analysis, and visualization. ( Read more about Cytoscape. This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know. To edit wiki pages, ask an existing wiki user to create a name and temporary password for you at sign up for an account. Then ask the wiki user to add your new user name to the editor list. See all pages in this wiki. Start page for app developers.

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Welcome - Cytoscape Wiki | wiki.cytoscape.org Reviews

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Revert to this revision. Is an open source platform for network data integration, analysis, and visualization. ( Read more about Cytoscape. This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know. To edit wiki pages, ask an existing wiki user to create a name and temporary password for you at sign up for an account. Then ask the wiki user to add your new user name to the editor list. See all pages in this wiki. Start page for app developers.

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Welcome - Cytoscape Wiki | wiki.cytoscape.org Reviews

https://wiki.cytoscape.org

Revert to this revision. Is an open source platform for network data integration, analysis, and visualization. ( Read more about Cytoscape. This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know. To edit wiki pages, ask an existing wiki user to create a name and temporary password for you at sign up for an account. Then ask the wiki user to add your new user name to the editor list. See all pages in this wiki. Start page for app developers.

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wiki.cytoscape.org

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Publications - Cytoscape Wiki

http://wiki.cytoscape.org/Publications

Revert to this revision. Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007;2(10):2366-82. Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks. Rowan Christmas, Iliana Avila-Campillo, Hamid Bolouri, Benno Schwikowski, Mark Anderson, Ryan Kelley, Nerius Landys, Chris Workman, Trey Ideker, Ethan Cerami, Rob Sheridan, Gary D. Bader, and Chris Sander. Am Assoc Cancer Res Educ Book 2005: 12-16. 256 hits as of May 29, 2007).

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Tips_on_using_this_wiki - Cytoscape Wiki

http://wiki.cytoscape.org/Tips_on_using_this_wiki

Tips on using this wiki. Tips on using this wiki. Revert to this revision. Login - Before editing pages in the Cytoscape Wiki, you should login by clicking the "Login" link near the top center of the page (if you have not yet registered, the Login page will allow you to do so). Use your real name as your login name if you want people to know what contributions you made to the wiki. Anonymous edits have been disabled to prevent spam. Tutorial. Another useful reference is HelpContents. Valid HTML 4.01.

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HelpContents - Cytoscape Wiki

http://wiki.cytoscape.org/HelpContents

Revert to this revision. You will find here the help pages for the wiki system itself. If you would like a quick overview of MoinMoin. S syntax, have a look at HelpOnMoinWikiSyntax. If you are looking for a structured introduction, have a look at the WikiCourse. Is help for users who are new to a MoinMoin. If you are about to install a MoinMoin. Wiki or want to learn how to administrate one. If you want to learn how to add your own features by changing the MoinMoin. More details, and a FAQ section.

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Cytoscape_3 - Cytoscape Wiki

http://wiki.cytoscape.org/Cytoscape_3

Revert to this revision. Documentation for Cytoscape 3.x. This is the main entry page for software developer documentation for Cytoscape 3. Tutorials are hosted at Open Tutorials. And are linked throughout these pages. Status of Cytoscape 3.x. As of April 2013, Cytoscape 3.x is now the production version of Cytoscape. We encourage developers to use Cytoscape 3 for new application development. Please provide feedback about its API and bugs on the Cytoscape mailing list. Cytoscape App Developer Ladder.

5

CytoscapeAndR - Cytoscape Wiki

http://wiki.cytoscape.org/CytoscapeAndR

Revert to this revision. Control Cytoscape from R Console. Is a plugin for Cytoscape to use Cytoscape as a RPC server. You can call Cytoscape functions from variety of languages including Perl, Python, Ruby, and R. In this tutorial, you learn how to use Cytoscape from R console. You need to install the following plugins/packages. Just copy the following jar files to Cytoscape plugin directory. CytoscapeRPC Plugin 0.95 or later. Apache XML RPC library. Required files are in lib. Create an empty network.

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Revert to this revision. Is an open source platform for network data integration, analysis, and visualization. ( Read more about Cytoscape. This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know. To edit wiki pages, ask an existing wiki user to create a name and temporary password for you at sign up for an account. Then ask the wiki user to add your new user name to the editor list. See all pages in this wiki. Start page for app developers.

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