zibraproject.org zibraproject.org

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The Zibra project are aiming to sequence a thousand genomes from Brazil to provide important epidemiological information about the spread of this disease in Brazil. We are an international group of scientists who will employ a fully-equipped sequencing trailer during a road trip in May and June 2016 to do sequencing.

http://www.zibraproject.org/

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The Zibra project are aiming to sequence a thousand genomes from Brazil to provide important epidemiological information about the spread of this disease in Brazil. We are an international group of scientists who will employ a fully-equipped sequencing trailer during a road trip in May and June 2016 to do sequencing.
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Blog | zibraproject.org Reviews

https://zibraproject.org

The Zibra project are aiming to sequence a thousand genomes from Brazil to provide important epidemiological information about the spread of this disease in Brazil. We are an international group of scientists who will employ a fully-equipped sequencing trailer during a road trip in May and June 2016 to do sequencing.

INTERNAL PAGES

zibraproject.org zibraproject.org
1

Offline barcode identification and demultiplexing with nanonet

http://www.zibraproject.org/blog/barcode-demultiplexing

Offline barcode identification and demultiplexing with nanonet. Jun 7, 2016. For the trip. However, with the transition of the project from R7 to R9, which increases the sequencing speed from 70 to 250 bp/s, coupled with the choice of sequencing amplicons of around 500 bp in length. The first attempt at this was extremely simple, using. From the EMBOSS package. The reads written to the downloads folder can then be processed by minoTour running on the local machines to visualise barcoding and coverage.

2

Trip

http://www.zibraproject.org/roadtrip

ZiBRA is grateful to these organisations for their support. Zika Real-time Sequencing Consortium. The Zibra project are aiming to sequence a thousand genomes from Brazil to provide important epidemiological information about the spread of this disease in Brazil. We are an international group of scientists who will employ a fully-equipped sequencing trailer during a road trip in May and June 2016 to do sequencing.

3

Protocol: Low input native barcoding protocol

http://www.zibraproject.org/blog/protocol-low-input-native-barcoding-protocol

Protocol: Low input native barcoding protocol. Jun 6, 2016. As you may remember back in December we ran an Oxford Nanopore bootcamp called Porecamp. Why am I talking about Porecamp? To address this we have developed the following low-input protocol to help with the ZiBRA project. This protocol requires only 100 ng per sample (i.e. 1/5th). It also reduces the number of quantification steps and SPRI cleanups. Dilute 100 ng pooled amplicons into 30 ul for each sample. Zika Real-time Sequencing Consortium.

4

Affiliates

http://www.zibraproject.org/affiliates

We are proud to be working with some super cool people:. Website provides a dynamic visualisation of the Zika public sequences posted so far. This website is made by the excellent Trevor Bedford and Richard Neher. Web forum is a place to discuss genome sequencing in viral epidemics. We will post updates to this website. Zika research is happening in the open, here are some useful online resources:. Website run by the World Health Organization tracks open resources published in their Bulletin. The Zibra p...

5

ZiBRA press coverage collection

http://www.zibraproject.org/blog/coverage-in-the-press

ZiBRA press coverage collection. Jun 6, 2016. University of Birmingham Press release. Http:/ www.birmingham.ac.uk/news/latest/2016/06/Mobile-laboratories-help-track-Zika-spread-across-Brazil.aspx. Background to the project and nanopore sequencing by Ed Yong:. Http:/ www.theatlantic.com/science/archive/2016/04/this-technology-will-allow-anyone-to-sequence-dna-anywhere/479625/. Http:/ paraibaonline.net.br/pesquisa-sobre-zika-virus-deve-analisar-cerca-de-300-amostras-na-paraiba/. Http:/ noticias.uol&#46...

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lab.loman.net lab.loman.net

2016: The Loman Lab year in Tweets · Loman Labs

http://lab.loman.net/2016/12/31/2016-in-review

Research group at the University of Birmingham, fusing cutting-edge sequencing with microbial genomics. 2016: The Loman Lab year in Tweets. The past is a foreign country well, that’s how I feel about January 2016 looking back today. Definitely some things happened in January, but can’t remember them. So I’m using Twitter Analytics to remind me. This was the month that #researchparasites. Came out, to the horror and amusement of the genomics field:. The logical fallacy of #researchparasites. WHO update on...

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ZiBRA bus watercolour by Matthew Cotten. Aug 24, 2016. A new method for whole Zika virus sequencing. Jul 11, 2016. ZiBRA update: Preliminary results. Jun 10, 2016. Diary: June 10 Reflections. Jun 8, 2016. One-step versus two-step PCR? The 12,000 pound question. Jun 8, 2016. Jun 7, 2016. Offline barcode identification and demultiplexing with nanonet. Jun 6, 2016. Protocol: Low input native barcoding protocol. Jun 6, 2016. ZiBRA press coverage collection. Jun 1, 2016. May 31, 2016. May 26, 2016.

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