cls.kuicr.kyoto-u.ac.jp
Laboratory of Chemical Life Science - Research Projects
http://cls.kuicr.kyoto-u.ac.jp/projects.html
Laboratory of Chemical Life Science - Research Projects. Development of new bioinformatics technologies. Graph comparison and feature detection algorithms. Kernel methods for graph/network analysis. Gene expression profile analysis. Protein 3D structure prediction. List of GIW poster presentations. List of publications in Japanese. Kyoto Encyclopedia of Genes and Genomes. GenomeNet integrated database retrieval system. Genome and chemical analysis. Institute for Chemical Research.
genome.jp
GenomeNet - Bioinformatics Tools
http://www.genome.jp/en/gn_tools.html
The bioinformatics tools in the following three categories are available at GenomeNet. Except the standard programs for sequence similarity search and multiple sequence alignment, the tools have been developed by the Kyoto University Bioinformatics Center. Multiple sequence alignment and phylogenetic analysis. Query interface for KEGG OC (KEGG Ortholog Cluster). Nakaya et al. (2013). Automatic genome annotation (KO assignment) and pathway/brite mapping. Moriya et al. (2007). Takami et al. (2012).
vardb.org
PSI-BLAST
http://www.vardb.org/vardb/blast/psiblast.html
PSI-BLAST searches protein sequences using. Institute for Chemical Research. Uji, Kyoto 611-0011, Japan. System last updated Thu, January 24, 2013 14:25:29 JST / SVN revision: 1054.
vardb.org
varDB: Antigenic variation database
http://www.vardb.org/vardb/homepage.html
VarDB: Antigenic variation database. Many phylogenetically diverse organisms use antigenic variation. Sequences by country: 1. Number of GenBank antigenic variation field isolate sequences by country (extracted from the GenBank country field). The two chromosomes in (A). Encode different polypeptides. A recombination event ocurring in the first exon allows the generation of diversity (B). This website was developed as part of a collaboration between Kyoto University. In Japan and the Karolinska Institute.
vardb.org
Align protein or nucleotide sequences with MAFFT
http://www.vardb.org/vardb/mafft.html
Align protein or nucleotide sequences with MAFFT. Create a multiple sequence alignment using MAFFT. Institute for Chemical Research. Uji, Kyoto 611-0011, Japan. System last updated Thu, January 24, 2013 14:25:29 JST / SVN revision: 1054.
lifesciencedb.mext.go.jp
Integrated Database Project
http://lifesciencedb.mext.go.jp/en/index.html
The portal site for the "Integrated Database Project". Is now available in English. This site will be unavailable due to system maintenance. From February 13, 2009 at 5 30 pm until February 16 at 10:30 am. The English web site of the Integrated Database Project has been posted. Recent research results and press releases. Organizations that implement subsidiary programs were decided. A search engine of the GenomeNet integrated database supported by Japanese was opened to the public. Implementation of a ce...