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bioafrica - Epidemiology, Genomics & Bioinformatics in Africa

Bioinformatics in Africa. HIV, TB, HPV, HBV and other pathogens bioinformatics, genomics, epidemiology and drug resistance research in Africa. Bioafrica is based at the Nelson R Mandela School of Medicine, University of KwaZulu-Natal, UKZN, Durban, South Africa. HIV subtype C, HIV evolution, REGA subtyping tool, HIV proteomics, RNA Virus Database

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bioafrica - Epidemiology, Genomics & Bioinformatics in Africa | bioafrica.net Reviews
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Bioinformatics in Africa. HIV, TB, HPV, HBV and other pathogens bioinformatics, genomics, epidemiology and drug resistance research in Africa. Bioafrica is based at the Nelson R Mandela School of Medicine, University of KwaZulu-Natal, UKZN, Durban, South Africa. HIV subtype C, HIV evolution, REGA subtyping tool, HIV proteomics, RNA Virus Database
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bioafrica - Epidemiology, Genomics & Bioinformatics in Africa | bioafrica.net Reviews

https://bioafrica.net

Bioinformatics in Africa. HIV, TB, HPV, HBV and other pathogens bioinformatics, genomics, epidemiology and drug resistance research in Africa. Bioafrica is based at the Nelson R Mandela School of Medicine, University of KwaZulu-Natal, UKZN, Durban, South Africa. HIV subtype C, HIV evolution, REGA subtyping tool, HIV proteomics, RNA Virus Database

INTERNAL PAGES

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1

BioAfrica - REGA HPV Subtyping Tool Web Interface

http://www.bioafrica.net/rega-genotype/html/subtypinghpv.html

REGA HPV (Human Papillomavirus) Automated Subtyping Tool (Version 1.0). This tool uses phylogenetic methods to identify the subtype of query sequences. Note for batch analysis. The REGA subtype tool accepts up to 1000 sequences at a time. The HPV subtyping is based only in the L1 region of the genome. Enter here your input data as FASTA format. Choose a mirror to subtype your sequences. Choose another virus to genotype. Developed by: Annabel Rector, Marc Van Ranst,. Andrew Rambaut, and Tulio de Oliveira.

2

BioAfrica - LASP HTLV-1 Subtyping Tool Web Interface

http://www.bioafrica.net/rega-genotype/html/subtypinghtlv.html

LASP HTLV-1 Automated Subtyping Tool (Version 1.0). This tool uses phylogenetic methods to identify the subtype of query sequences. The HTLV-1 subtyping is based only in the LTR region of the genome. Note for batch analysis. The LASP HTLV-1 subtype tool accepts up to 1000 sequences at a time. Enter here your input data as FASTA format. Choose a mirror to subtype your sequences. Choose another virus to genotype. Developed by: Luiz Carlos J Alcantara, Sonia Van Dooren, Anne-Mieke Vandamme,.

3

BioAfrica - HIV BLAST Search Server:

http://www.bioafrica.net/blast/index.html

Human immunodeficiency virus 1 (HIV-1) Blast Search. Complete Genbank search, numbering positioning and fast subtyping with HIV-1 genotype reference dataset. Enter sequence below in FASTA. Or load it from disk. Choose the Option Below:. Search the Complete HIV Genbank database. Search the HIV Genotype Reference database. Search the HXB2 HIV reference Sequence. Back to the BioAfrica Blast server webpage. Choose program to use and database to search:. The query sequence is filtered. By Tulio de Oliveira.

4

Bioafrica.net - Blog: Genetic study indicates two novel resistance loci for severe malaria in Africa

http://www.bioafrica.net/blogs.php?id=36

Here we host blogs and tweets about our work and other related topics of interest. If you like bioafrica.net and would like to blog with us, send us an email and let us know. Genetic study indicates two novel resistance loci for severe malaria in Africa. Author: Zakia Jeewa and Tulio de Oliveira - 2014-08-01. Figure 1. Prof. Ziegler (Middle back) and attendants at the seminar. The lecture was arranged in association with The Wellcome Trust Africa Centre Genomics Programme, UKZN MRC Flagship project and U...

5

SATuRN/PASER - 8th Southern African HIV & TB Drug Resistance and Treatment Monitoring Workshop, University of the Free State, 20 to 22 November 2013, Bloemfontein, South Africa.

http://www.bioafrica.net/workshops/8thsaturnPaserresitanceworkshop.html

8th Southern African HIV and TB Drug Resistance and Treatment Monitoring Workshop, University of the Free State, 20 to 22 November 2013, Bloemfontein, South Africa. The Southern Africa Treatment and Resistance Network (SATuRN). And the Amsterdam Institute for Global Health and Development (AIGHD) â PASER program. Application deadline: 10 Oct 2013). Please submit application forms to:. Tel: 27 35 550 7500. Fax: 27 35 550 7565. Email: xkineri@africacentre.ac.za. Workshop Dates: 20 to 22 Nov 2013. Cloete Va...

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MUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://muii.org.ug/data/slider/16/Hot

30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

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BioAfrica - Viruses Genotyping Tools

http://newbioafrica.mrc.ac.za/rega-genotype/html/index.html

Click in one of the virus on the tree to subtype your sequences. REGA HIV-1 Subtyping Tool. REGA HIV-2 Subtyping Tool. Dengue, Zika and Chikungunya Subtyping Tool. Oxford Hepatitis B virus Subtyping Tool. Oxford Hepatitis C virus Subtyping Tool. BioAfrica Human herpesvirus 8 Subtyping Tool. REGA Human papillomavirus Subtyping Tool. About the tools' publications and its developers. The Virus Genotyping Tools are developed in cooperation. UKZN, South Africa. With the Evolutionary Biology Group.

muii.org.ug muii.org.ug

MUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://www.muii.org.ug/data/qmenu/17/Call%20for%20Abstracts%20Science%20Symposium.html

30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

muii.org.ug muii.org.ug

MUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://www.muii.org.ug/data/course/6/Gene-Expression-Data-Analysis-workshop.html

30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

muii.org.ug muii.org.ug

MUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://muii.org.ug/data/slider/14/.html

30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

muii.org.ug muii.org.ug

MUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://muii.org.ug/data/slider/15/FGSB

30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

muii.org.ug muii.org.ug

MUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://muii.org.ug/data/slider/17/UVRI

Opening of the Training Building. Opening of the Training Building. 30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

muii.org.ug muii.org.ug

Science SymposiumMUII:: Makerere University/UVRI Infection and Immunity Research Training Programme

http://muii.org.ug/data/mevents/42/Science-Symposium.html

August 13, 2015. Uganda Virus Research Institute. 30th, August 2016. 11th, July 2016. Makerere/UVRI Centre of Excellence for Infection and Immunity Research. Launch for MUII PLUS Fellows.

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HIV Information Resources

http://hire.uohbif.in/related_virus/hiv1.php

HIV Drug Resistance Database. Human immunodeficiency virus (HIV). There are two species of HIV known to exist: HIV-1 and HIV-2. HIV-1 is more infectious than HIV-2. HIV-1 is a globel AIDS causing retrovirus,HIV-2 is confined to west Africa. The strains of HIV-1 can be classified into four groups: the "major" group M, the "outlier" group O and two new groups, N and P. Douek DC, Roederer M, Koup RA (2009). Emerging concepts in the immunopathogenesis of AIDS. Annu Rev. Med. 1712–22. doi. Ferrantelli F, Cafa...

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BioAfrica team has evolved to become the KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP). KRISP now presents the research, software and publications of Prof. Tulio de Oliveira. And members of his research group. KRISP is based at the Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa. To get information on our research. The Bioafrica.net will be maintained for historical reasons for the next couple of years. K-RITH building...

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