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CEA/DSV

BIODEV: an incomplete list of webtools. Developed at CEA, LIFE SCIENCES DIVISION. Docking isosurfaces into AFM SAXS cryoEM envelopes. Combine of docking solutions of structural subunits under an AFM surface. Docking structures under an AFM surface. In silico study of actin-based force generation during cell movement or morphogenesis. Offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. Is an integrated and comprehensive database of TF proteins, which contains a c...

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CEA/DSV | biodev.cea.fr Reviews
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BIODEV: an incomplete list of webtools. Developed at CEA, LIFE SCIENCES DIVISION. Docking isosurfaces into AFM SAXS cryoEM envelopes. Combine of docking solutions of structural subunits under an AFM surface. Docking structures under an AFM surface. In silico study of actin-based force generation during cell movement or morphogenesis. Offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. Is an integrated and comprehensive database of TF proteins, which contains a c...
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1 isph
2 iron sulfur protehome
3 dock3dindepth
4 combinedocksafm
5 dockafm
6 actinsimu
7 morpheus
8 the interevol server
9 destripe
10 adepth
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isph,iron sulfur protehome,dock3dindepth,combinedocksafm,dockafm,actinsimu,morpheus,the interevol server,destripe,adepth,bridged,the virfam,dsir,rasmot 3d pro,the strip,proteins,hmm kalign package,the scotch,interoporc,institutes,cea/dsv
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CEA/DSV | biodev.cea.fr Reviews

https://biodev.cea.fr

BIODEV: an incomplete list of webtools. Developed at CEA, LIFE SCIENCES DIVISION. Docking isosurfaces into AFM SAXS cryoEM envelopes. Combine of docking solutions of structural subunits under an AFM surface. Docking structures under an AFM surface. In silico study of actin-based force generation during cell movement or morphogenesis. Offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. Is an integrated and comprehensive database of TF proteins, which contains a c...

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biodev.cea.fr biodev.cea.fr
1

VIRFAM Home page

http://biodev.cea.fr/virfam

VIRFAM is dedicated to the recognition of head-neck-tail modules. And of recombinase genes in phage genomes. You can use this server to search for remote homologs of specific protein families within protein sequences of bacteriophages. The process of one sequence, including profile generation and database scanning may last up to 5 minutes each. Please provide your email below to be kept informed. 1 Select type of analysis. 2 Protein Sequences to analyze. Or browse the whole database. See how to proceed.

2

RASMOT-3D PRO Home page

http://biodev.cea.fr/rasmot3d

Welcome to RASMOT-3D PRO. RASMOT-3D PRO searches in protein structure files for proteins possessing a group of residues in a topology similar to that adopted by a 3D motif given in input. If you don't know what is RASMOT-3D PRO or how to use it,. Please visit the FAQ. And the help page. NB : Please wait the end of your request to send a new one. 1 Reference motif specification. Upload the PDB file. Containing the 3D coordinates of the motif you want to search. On the help page. The RMSD value corresponds...

3

SCOTCH Home page

http://biodev.cea.fr/scotch

Surface Complementarity Trace in Complex History, SCOTCH, is a robust method to discriminate native protein complex interfaces using evolutionary informations. You can use this page to score up to 10 structural models of a complex between two proteins provided you have two multiple sequence alignments for each protein, gathering at least 20 species. 1 Upload structural models of the complex (.pdb files). 2 Upload sequence alignments for proteins A and B. Check the correct format for the alignments.

4

Morpheus - Home page

http://biodev.cea.fr/morpheus

Prediction of Transcription Factors Binding Sites based on Position Weight Matrix. This web site offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. As input, the programs uses a set of sequences in FASTA format and a matrix (Count Matrix, a Frequency Matrix or Position Weight Matrix- PWM). PWM can be obtained from databases such as JASPAR. Or directly generated from a DNA sequence alignment using tools as MEME. There are 3 programs available :.

5

Dock3DinDepth Home page

http://biodev.cea.fr/dock3dindepth

Docking isosurfaces into AFM SAXS cryoEM envelopes. Please, fill-in the two lines below FIRST. In Å :. Region in Å :. Region in Å :. XY, Z) in Å :. In Å :. Enter a valid e-mail address where we can send a link to the results when the run is completed. RC Chaves JL Pellequer (2013). CEA 2013 - Tous droits réservés - Mentions légales.

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BIODEV: an incomplete list of webtools. Developed at CEA, LIFE SCIENCES DIVISION. Docking isosurfaces into AFM SAXS cryoEM envelopes. Combine of docking solutions of structural subunits under an AFM surface. Docking structures under an AFM surface. In silico study of actin-based force generation during cell movement or morphogenesis. Offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. Is an integrated and comprehensive database of TF proteins, which contains a c...

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BIODEV: an incomplete list of webtools. Developed at CEA, LIFE SCIENCES DIVISION. Docking isosurfaces into AFM SAXS cryoEM envelopes. Combine of docking solutions of structural subunits under an AFM surface. Docking structures under an AFM surface. In silico study of actin-based force generation during cell movement or morphogenesis. Offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. Is an integrated and comprehensive database of TF proteins, which contains a c...

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