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Benos Lab - Main

Our ultimate goal is to investigate the molecular mechanisms that are implicated in chronic diseases and developmental processes. Our work involves the development of new computational and statistical models for the study of gene expression regulation (protein coding and non-coding genes) in a systems' biology framework. For Laboratory's news archive click here. Mar 2011: After 2 years Abha leaves the lab to go to sunny Berkeley. We wish her the best of luck. Nov 2010: The new miRconnX server.

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Benos Lab - Main | biodev.hgen.pitt.edu Reviews
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Our ultimate goal is to investigate the molecular mechanisms that are implicated in chronic diseases and developmental processes. Our work involves the development of new computational and statistical models for the study of gene expression regulation (protein coding and non-coding genes) in a systems' biology framework. For Laboratory's news archive click here. Mar 2011: After 2 years Abha leaves the lab to go to sunny Berkeley. We wish her the best of luck. Nov 2010: The new miRconnX server.
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Benos Lab - Main | biodev.hgen.pitt.edu Reviews

https://biodev.hgen.pitt.edu

Our ultimate goal is to investigate the molecular mechanisms that are implicated in chronic diseases and developmental processes. Our work involves the development of new computational and statistical models for the study of gene expression regulation (protein coding and non-coding genes) in a systems' biology framework. For Laboratory's news archive click here. Mar 2011: After 2 years Abha leaves the lab to go to sunny Berkeley. We wish her the best of luck. Nov 2010: The new miRconnX server.

INTERNAL PAGES

biodev.hgen.pitt.edu biodev.hgen.pitt.edu
1

Benos Lab - Services

http://biodev.hgen.pitt.edu/services.html

Condition-specific mRNA-microRNA regulatory networks. Analysis of Short Time-series using Rank Order preservation. Energy normalized LOGOs of the C2H2 protein family. Finding mammalian transcription factor binding sites using phylogentic footprinting. Alignment, Similarity, and Database Matching for DNA Motifs. BIOBASE database and tools (internal access only - pswd required). Suppl 1):S35 ( pdf. Training and testing datasets. README file (text - description fo the dataset files). Web Server issue) :.

2

Benos Lab - Lab Members

http://biodev.hgen.pitt.edu/lab.html

For a group picture click here. Abha Bais, PhD. Takis Benos, PhD. PhD Student, CPCB. Claudia Coronnello, PhD. Lucas Santana dos Santos. MSc student, DBMI. Tridib Dutta, PhD. PhD Student, CPCB. PhD Student, CPCB. Advised jointly with Veronica Hinman. Lane Center, Mellon Institute. MSc (Biostatistics), PhD (Human Genetics). Duke Univ, postdoc (U. Ohler's group). MIT, postdoc (D. Gifford's group). Natl Res Council Canada, Res Assoc. University of Pittsburgh Department of Computational Biology.

3

Benos Lab - Publications

http://biodev.hgen.pitt.edu/publications.html

Selected journal papers (peer reviewed). For an extended list click here. List (by year) click here. KV Pandit, D. Corcoran. H Yousef, M. Yarlagadda, A. Tzouvelekis, K.F. Gibson, K. Konishi, S.A. Yousem, M. Singh, D. Handley, T. Richards, M. Selman, S.C. Watkins, A. Pardo, A. Ben-Yehudah, D. Bouros, O. Eickelberg, P. Ray, P.V. Benos. N Kaminski, "Inhibition and role of let-7d in idiopathic pulmonary fibrosis.". Am J Resp Crit Care Med. NA Temiz, P.V. Benos. B Gordon, A. Bhattacharjee, N. Kaminski. V Hinm...

4

Benos Lab - Positions

http://biodev.hgen.pitt.edu/positions.html

5

Benos Lab - Profile

http://biodev.hgen.pitt.edu/profile.html

Takis Benos, Ph.D. Department of Computational Biology. School of Medicine, University of Pittsburgh. Biomedical Science Tower 3. 3501 Fifth Avenue, Pittsburgh, PA 15213. BSc in Mathematics, University of Crete. PhD in Molecular Biology, University of Crete. Post-doctoral, European Molecular Biology Laboratory - The EBI. Post-doctoral, Washington University in St. Louis. Evolution of gene regulation. Http:/ www.benoslab.pitt.edu/ benos/. University of Pittsburgh Department of Computational Biology.

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Our ultimate goal is to investigate the molecular mechanisms that are implicated in chronic diseases and developmental processes. Our work involves the development of new computational and statistical models for the study of gene expression regulation (protein coding and non-coding genes) in a systems' biology framework. For Laboratory's news archive click here. Mar 2011: After 2 years Abha leaves the lab to go to sunny Berkeley. We wish her the best of luck. Nov 2010: The new miRconnX server.

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