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Broad-Enrich: gene set enrichment testing for sets of broad genomic regions

Broad-Enrich: gene set enrichment testing for sets of broad genomic regions. Broad-Enrich tests sets of broad genomic regions (e.g., from ChIP-seq data for histone modifications or copy number variations) for enriched biological pathways, Gene Ontology terms, or other gene sets. The pre-defined gene sets are the same as used in LRpath, and can be browsed here. Broad-Enrich is also available as part of the Chip-Enrich R package: Broad-Enrich.zip. Only use peaks within 1kb of a transcription start site).

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Broad-Enrich: gene set enrichment testing for sets of broad genomic regions | broad-enrich.med.umich.edu Reviews

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Broad-Enrich: gene set enrichment testing for sets of broad genomic regions. Broad-Enrich tests sets of broad genomic regions (e.g., from ChIP-seq data for histone modifications or copy number variations) for enriched biological pathways, Gene Ontology terms, or other gene sets. The pre-defined gene sets are the same as used in LRpath, and can be browsed here. Broad-Enrich is also available as part of the Chip-Enrich R package: Broad-Enrich.zip. Only use peaks within 1kb of a transcription start site).

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10 annotation databases

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Broad-Enrich: gene set enrichment testing for sets of broad genomic regions | broad-enrich.med.umich.edu Reviews

https://broad-enrich.med.umich.edu

Broad-Enrich: gene set enrichment testing for sets of broad genomic regions. Broad-Enrich tests sets of broad genomic regions (e.g., from ChIP-seq data for histone modifications or copy number variations) for enriched biological pathways, Gene Ontology terms, or other gene sets. The pre-defined gene sets are the same as used in LRpath, and can be browsed here. Broad-Enrich is also available as part of the Chip-Enrich R package: Broad-Enrich.zip. Only use peaks within 1kb of a transcription start site).

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chip-enrich.med.umich.edu

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data

http://chip-enrich.med.umich.edu/chipMain.jsp

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...

sartorlab.ccmb.med.umich.edu

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Skip to main content. Department of Computational Medicine and Bioinformatics. Http:/ broad-enrich.med.umich.edu. Http:/ conceptgen.ncibi.org. Http:/ lrpath.ncibi.org/. Find Medical Subject Headings (MeSH terms) enriched for a particular compound or compounds enriched for a particular MeSH term. Metab2MeSH uses a statistical approach to reliably and automatically annotate metabolites with the concepts defined in MeSH, the National Library of Medicine's controlled vocabulary for biomedical concepts&#4...

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broad-enrich.med.umich.edu

Broad-Enrich: gene set enrichment testing for sets of broad genomic regions

Broad-Enrich: gene set enrichment testing for sets of broad genomic regions. Broad-Enrich tests sets of broad genomic regions (e.g., from ChIP-seq data for histone modifications or copy number variations) for enriched biological pathways, Gene Ontology terms, or other gene sets. The pre-defined gene sets are the same as used in LRpath, and can be browsed here. Broad-Enrich is also available as part of the Chip-Enrich R package: Broad-Enrich.zip. Only use peaks within 1kb of a transcription start site).

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