caps.tcd.ie

CAPS Online

Please upload/select a file with aligned sequence data [info]. Use example file groel.aln. If available, upload a PDB structure file matching the first input sequence [info]. For GroEL example file). By default the first chain is used). Auto-retrieve PDB structure file with minimum. For inter-molecule analysis upload a second data file [info]. If available, upload a PDB structure file matching the second input sequence [info]. Insert PDB ID 2:. By default the first chain is used). Click to change defaults.

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Please upload/select a file with aligned sequence data [info]. Use example file groel.aln. If available, upload a PDB structure file matching the first input sequence [info]. For GroEL example file). By default the first chain is used). Auto-retrieve PDB structure file with minimum. For inter-molecule analysis upload a second data file [info]. If available, upload a PDB structure file matching the second input sequence [info]. Insert PDB ID 2:. By default the first chain is used). Click to change defaults.

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7 insert pdb id

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CAPS Online | caps.tcd.ie Reviews

https://caps.tcd.ie

Please upload/select a file with aligned sequence data [info]. Use example file groel.aln. If available, upload a PDB structure file matching the first input sequence [info]. For GroEL example file). By default the first chain is used). Auto-retrieve PDB structure file with minimum. For inter-molecule analysis upload a second data file [info]. If available, upload a PDB structure file matching the second input sequence [info]. Insert PDB ID 2:. By default the first chain is used). Click to change defaults.

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caps.tcd.ie

1

CAPS Online

http://caps.tcd.ie/help.html

Below you can find a list of frequently asked questions as well as a list of help topics that are linked from the analysis and results pages. If you don't find all the help you need, please send an e-mail to one of the authors listed on the contact. How can I generate input files for CAPS? Tool provides a very comfortable way to generate a collection of sequences from a range of species for your protein of interest and align them on your desktop. Alternatively you can use OMA. To do this online. For inte...

2

CAPS Online

http://caps.tcd.ie/caps/home.html

This server provides an online interface to CAPS version 2. A Perl program that performs C. Equences, i.e. it searches through a set of homologous sequences and detects groups of amino acids that evolve together. The results can indicate functionally or structurally linked regions that are subjected to strong selective constraints. An older version is available here. This website is free and open to all users and there is no login requirement. Mon 26 May 2014. Improved scoring of amino acid sites.

3

CAPS Online

http://caps.tcd.ie/caps/help.html

Below you can find a list of frequently asked questions as well as a list of help topics that are linked from the analysis and results pages. If you don't find all the help you need, please send an e-mail to one of the authors listed on the contact. How can I generate input files for CAPS? Tool provides a very comfortable way to generate a collection of sequences from a range of species for your protein of interest and align them on your desktop. Alternatively you can use OMA. To do this online. For inte...

4

CAPS Online Tutorial

http://caps.tcd.ie/caps/tutorial.html

Coevolution analysis of the E.coli GroEL protein. Input consists of a set of 12 bacterial GroEL DNA sequences that have been aligned with clustalw: groel.aln. CAPS can process both DNA and protein sequences). Browse to the CAPS Server home page and click on the ' Analysis. Instead of uploading the groel file you can simply tick the checkbox in the input section:. Click to open up additional input options:. Click on the link to transfer the PDB ID into the according text box:.

5

CAPS Online

http://caps.tcd.ie/caps/downloads.html

All software is available for free. To run CAPS on your own computer you can download the C source code or some pre-compiled binaries for Mac and Linux computers: http:/ bioinf.gen.tcd.ie/ faresm/software/software.html#caps2.

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bioinf.gen.tcd.ie

SFI Bioinformatics Support - Tools

http://bioinf.gen.tcd.ie/tools.html

Links to online tools hosted and administered locally. A microarray data analysis tool. Co-evolution of Amino acids using Protein Sequences. An upate alerting service for PubMed and GenBank. Serovar Typhimurium Gene Expression Compendium. Last modified: Tue Nov 20 13:26:09 GMT 2014 by Karsten Hokamp.

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Please upload/select a file with aligned sequence data [info]. Use example file groel.aln. If available, upload a PDB structure file matching the first input sequence [info]. For GroEL example file). By default the first chain is used). Auto-retrieve PDB structure file with minimum. For inter-molecule analysis upload a second data file [info]. If available, upload a PDB structure file matching the second input sequence [info]. Insert PDB ID 2:. By default the first chain is used). Click to change defaults.

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