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Computational Cancer Genomics

Swiss Institute of Bioinformatics. Welcome to the Computational Cancer Genomics Lab. CCG) lab of the Swiss Institute of Bioinformatics. SIB) is dedicated to the development of analysis tools and database resources related to genome structure and gene regulation. Main Databases and Tools. The Eukaryotic Promoter Database. Masse Genome Annotation Archive. A database for ultraconserved noncoding elements and genomic regulatory blocks. UCNEbase provides information on the evolution and genomic organization o...

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Computational Cancer Genomics | ccg.vital-it.ch Reviews

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Swiss Institute of Bioinformatics. Welcome to the Computational Cancer Genomics Lab. CCG) lab of the Swiss Institute of Bioinformatics. SIB) is dedicated to the development of analysis tools and database resources related to genome structure and gene regulation. Main Databases and Tools. The Eukaryotic Promoter Database. Masse Genome Annotation Archive. A database for ultraconserved noncoding elements and genomic regulatory blocks. UCNEbase provides information on the evolution and genomic organization o...

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1 computational cancer genomics

2 expasy

3 epfl

4 the c

5 omputational c

6 ancer g

7 enomics

8 ucnebase

9 chip seq

10 pwmtools

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computational cancer genomics,expasy,epfl,the c,omputational c,ancer g,enomics,ucnebase,chip seq,pwmtools,snp2tfbs,htpselex,tagscan,zfn site,tromer,madap,documentation,links,and pwmscore,htpselx,trascriptome analysis database,publications,ensembl,ucsc

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Computational Cancer Genomics | ccg.vital-it.ch Reviews

https://ccg.vital-it.ch

Swiss Institute of Bioinformatics. Welcome to the Computational Cancer Genomics Lab. CCG) lab of the Swiss Institute of Bioinformatics. SIB) is dedicated to the development of analysis tools and database resources related to genome structure and gene regulation. Main Databases and Tools. The Eukaryotic Promoter Database. Masse Genome Annotation Archive. A database for ultraconserved noncoding elements and genomic regulatory blocks. UCNEbase provides information on the evolution and genomic organization o...

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ccg.vital-it.ch

1

HTPSELEX Database

https://ccg.vital-it.ch/htpselex

Swiss Institute of Bioinformatics. Contains sets of invitro selected transcription factor binding site sequences obtained with SELEX and high-throughput SELEX method. The database hosts 12 individual Selex libraries for the transcription factors CTF/NF1 and LEF/TCF families totaling more than 40,000 sites. In addition we also have manually curated SELEX datasets from the literature for 25 different transcription factors. Access to HTPSELEX Database and documents. Browse the HTPSELEX Database. The Eukaryt...

2

Tagger

https://ccg.vital-it.ch/tagger

Swiss Institute of Bioinformatics. Access to Tagger Tools. Access to other CCG Tools. Tagger is a tool which allows searching fixed-sequence tags (or sequence branches) against entire genomes or mRNA reference sequence databases. The software package comprises two main tools: the tagger. Program, a memory-based tool that hashes the query sequence in memory and then scans for word matches in the database, and the fetchGWI. Based on Tagger, we provide two Web-based applications for the following purposes:.

3

Ultraconserved Gene Regulatory Blocks

https://ccg.vital-it.ch/UCNEbase

Swiss Institute of Bioinformatics. Search by external IDs. Provides information on the evolution and genomic organization of ultra-conserved non-coding elements (UCNEs). As most UCNEs occur as clusters near key developmental genes, our resource is organized along two hierarchical levels:. Genomic regulatory blocks (GRBs). UCNEbase is potentially useful to any computational or experimental biologist interested in the evolution and function of cis. Regulatory elements near trans-dev. Or in our publication:.

4

PWMTools

https://ccg.vital-it.ch/pwmtools

Registrations are now open! Swiss Institute of Bioinformatics. Access to other CCG Tools. 13-08-2015 - Improvements on PWMTools. Most of the back-end software of the Word Analysis tool ( MSeq. Has been replaced by a faster implementation using C and C . Is a Web interface for P. Model generation and evaluation. Includes the following tools:. Which is a Web-based software pipeline used to derive TFBS models from DNA sequences such as HT-SELEX and MITOMI-seq. Last update 9 Feb 2016. Back to the Top.

5

TagScan

https://ccg.vital-it.ch/tagger/tagscan.html

Swiss Institute of Bioinformatics. Access to Tagger Tools. Access to other CCG Tools. Homo sapiens GRCh38 (hg38). Homo sapiens GRCh37 (hg19). Homo sapiens NCBI36 (hg18). Mus musculus GRCm38 (mm10). Mus musculus NCBI37 (mm9). Bos taurus NCBI3 (bosTau3). Canis familiaris NCBI2 (canFam2). Pan troglodytes NCBI2 (panTro2). Rattus norvegicus NCBI5 (rn5). Rattus norvegicus NCBI3 (rn4). Sus scrofa NCBI4 (susScr). Danio rerio Zv9 (danRer7). Danio rerio Zv7 (danRer5). Danio rerio Zv6 (danRer4). Back to the Top.

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biokemia.lap.hu

Biokémia - Nukleinsav adatbázisok, kezelőfelületek, programok. A legjobb válaszok profiktól.

http://biokemia.lap.hu/nukleinsav_adatbazisok_kezelofeluletek_programok/11299378

Legyen a Startlap a kezdőlapom. Nukleinsav adatbázisok, kezelőfelületek, programok. Http:/ biokemia.lap.hu/. Ezt a linket add a Startlaphoz! DbEST (PCR amplifikált cDNS). Ezt a linket add a Startlaphoz! Eukariota promoter adatbázis (SIB). Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Genome Sorter, Genome Browser, Blat. Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! In silico PCR (UCSC). Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Minden ami kukuc :-).

cleanex.vital-it.ch

CleanEx Database

http://cleanex.vital-it.ch/current/format_help.php

Swiss Institute of Bioinformatics. Target Batch Search : Formats for Input Files. Only officially approved symbols. For Human, the HUGO nomenclature is used. For Mouse the MGD nomenclature is applied. Only verified RefSeq sequences beginnig with NM. Standard format : target-type-code followed by the clone identifier. Specific targets codes are :. Text file, identifier separator can be space(s), carriage return, tab. Favorite one is a text file with one space as input separator. Last update March 2014.

dnasc.byu.edu

Resources

http://dnasc.byu.edu/Resources.aspx

The College of Life Sciences. DNA Sequencing Center Equipment. I llumina HiSeq 2500. In Rapid Mode generates 125-150Gb of sequence data (2x250) per lane of a 2 lane flow cell, or runs a single flow cell (8 lane flow cell) in High Output Run Mode and generates 62.5 Gb of sequence data (2x125) per lane. This machine can operate with twice this capacity in either Rapid Mode (2x2 lanes) or high output mode (2x8 lane). In high output mode it generates some 2 billion reads per flow cell. For the computational ...

epd.vital-it.ch

EPD The Eukaryotic Promoter Database

http://epd.vital-it.ch/documents.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew assembly pipeline for Homo sapiens. List of genome assemblies used in EPD. List of alternative promoters. Groups of homologous promoters. Last update Aug. 2015. Swiss Institute of Bioinformatics. Back to the Top.

epd.vital-it.ch

EPD The Eukaryotic Promoter Database

http://epd.vital-it.ch/drosophila/drosophila_database.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew, the Drosophila melanogaster. Fruit-fly) curated promoter database. UCSC known genes (30-Jun-2013). Based on data from:. ModENCODE CAGE data downloaded from GEO. Promoter assembly pipeline description. Promoter Selection and Anaysis tools. Promoter subset selection based on EPD-supplied annotation. Extract DNA motif positions near transcription start sites. Example: extract coordinates of CCAAT-boxes located betw...

epd.vital-it.ch

EPD The Eukaryotic Promoter Database

http://epd.vital-it.ch/EPDnew_select.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. Use this tool to select all promoters. Leaving all 'Optional criterias' blank) or restrict them based on all or some of their genomic contexes (such as presence of core promoter elements) or expression levels. After selection, you can download them in various format (for example in FASTA, BED, etc.) or use them to perform further analysis such as motif enrichment/search and chromatin status. Average expression of at least.

epd.vital-it.ch

EPD The Eukaryotic Promoter Database

http://epd.vital-it.ch/EPD_database.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. The Eukaryotic Promoter Database. Current version is based on EMBL 128. EPD database is accessible in different ways: (1) using the input form in the header, searching for single gene symbol, gene description or ENSEMBL / RefSeq gene IDs; (2) using the download page. For selecting specie-specific promoters and downloading them in various formats or (4) through an ftp website. Last update Aug. 2015. Back to the Top.

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Welcome to NTUST EE. We focus on Wireless Communications and Networking. The research topics contain:. ZigBee (IEEE 802.15.4),. Visible Light Communications (IEEE 802.15.7). Professor Bih-Hwang, Lee. PhD and M.S. Students. PhD and M.S. Alumnus. PhD, in Electrical Engineering,. North Carolina State University, USA. Email: lee@ccg.ee.ntust.edu.tw. Research Area and Important Publication. Computer Networks Performance Evaluation. PhD and M.S. Students. 楊淑亘、林家慶、紀凱程、施政廷、M. FARID WAJDI. Let's Get In Touch!

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The Combinatorics, Coding and Security Group (CCSG) is a research group in the Department of Information and Communications Engineering (DEIC) at the Universitat Autònoma de Barcelona (UAB). Group CCSG has been uninterruptedly working since 1987 in several projects and research activities on Information Theory. On one hand, the more theoretical topics on which our group is working are related to propelinear codes, transitive codes, etc. or, specifically, Preparata codes, Kerdock codes, Reed-Muller co...

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CCSG

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COMISSÃO CENTRAL DE GRADUAÇÃO. COMISSÃO CENTRAL DE GRADUAÇÃO - C.C.G. Foi criada através do Decreto n. 26.797, de 20.02.1987, que alterou os Estatutos e Regimento Geral da UNICAMP. A DELIBERAÇÃO CONSU-A-15, de 29.09.98 dispõe sobre o Regimento Interno da CCG, saiba mais detalhes. CCG/PRG/UNICAMP - TODOS OS DIREITOS RESERVADOS 2013. LOGIN.

ccg.vital-it.ch

Computational Cancer Genomics

Swiss Institute of Bioinformatics. Welcome to the Computational Cancer Genomics Lab. CCG) lab of the Swiss Institute of Bioinformatics. SIB) is dedicated to the development of analysis tools and database resources related to genome structure and gene regulation. Main Databases and Tools. The Eukaryotic Promoter Database. Masse Genome Annotation Archive. A database for ultraconserved noncoding elements and genomic regulatory blocks. UCNEbase provides information on the evolution and genomic organization o...

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