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CLIMB | Cloud Infrastructure for Microbial Bioinformatics

CLIMB Cloud Infrastructure for Microbial Bioinformatics – WORLD-LEADING MICROBIAL BIOINFORMATICS CYBER-INFRASTRUCTURE. Brought to you by:. The CLIMB project (Cloud Infrastructure for Microbial Bioinformatics) is a collaboration between Warwick, Birmingham, Cardiff and Swansea Universities to develop and deploy a world leading cyber-infrastructure for microbial bioinformatics; providing free. Cloud-based compute, storage, and analysis tools for academic microbiologists in the UK.

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CLIMB | Cloud Infrastructure for Microbial Bioinformatics | climb.ac.uk Reviews

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CLIMB Cloud Infrastructure for Microbial Bioinformatics – WORLD-LEADING MICROBIAL BIOINFORMATICS CYBER-INFRASTRUCTURE. Brought to you by:. The CLIMB project (Cloud Infrastructure for Microbial Bioinformatics) is a collaboration between Warwick, Birmingham, Cardiff and Swansea Universities to develop and deploy a world leading cyber-infrastructure for microbial bioinformatics; providing free. Cloud-based compute, storage, and analysis tools for academic microbiologists in the UK.

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CLIMB | Cloud Infrastructure for Microbial Bioinformatics | climb.ac.uk Reviews

https://climb.ac.uk

CLIMB Cloud Infrastructure for Microbial Bioinformatics – WORLD-LEADING MICROBIAL BIOINFORMATICS CYBER-INFRASTRUCTURE. Brought to you by:. The CLIMB project (Cloud Infrastructure for Microbial Bioinformatics) is a collaboration between Warwick, Birmingham, Cardiff and Swansea Universities to develop and deploy a world leading cyber-infrastructure for microbial bioinformatics; providing free. Cloud-based compute, storage, and analysis tools for academic microbiologists in the UK.

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CLIMB | Cloud Infrastructure for Microbial Informatics

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CLIMB | Cloud Infrastructure for Microbial Bioinformatics

http://www.climb.ac.uk/news

News – CLIMB Cloud Infrastructure for Microbial Bioinformatics. CLIMB on the EDGE. By Isabel Dodd Monday, March 6th, 2017. Nick Loman talks to Nature about installing EDGE (Empowering the Development of Genomics Expertise) on CLIMB: http:/ www.nature.com/news/how-bioinformatics-tools-are-bringing-genetic-analysis-to-the-masses-1.21545? DEVELOPING PIPELINES FOR BACTERIAL EVOLUTIONARY GENOMICS. By Ben Pascoe Friday, March 3rd, 2017. MRC CLIMB workshop at the MRC Unit, Gambia. The New Year kicked off with A...

2

CLIMB | Cloud Infrastructure for Microbial Bioinformatics

http://www.climb.ac.uk/overview/outputs

Outputs – CLIMB Cloud Infrastructure for Microbial Bioinformatics. Lucas Sinclair, Umer Z Ijaz, Lars Juhl Jensen, Marco JL Coolen, Cecile Gubry-Rangin, Alica Chroňáková, Anastasis Oulas, Christina Pavloudi, Julia Schnetzer, Aaron Weimann, Ali Ijaz, Alexander Eiler, Christopher Quince, Evangelos Pafilis 2016. Seqenv: linking sequences to environments through text mining. PeerJ 4: e2690. Wimaralathna H, Murray S. Esson D, Mather AE, Scanlan E, Gupta S, de Vries SPW, Bailey D, Harris SR, McKinley TJ, Méric G.

3

CLIMB | Cloud Infrastructure for Microbial Bioinformatics

http://www.climb.ac.uk/overview/system

The System – CLIMB Cloud Infrastructure for Microbial Bioinformatics. The system will focus on features relevant to genomics researchers with features such as huge data storage capabilities, very high-memory research servers for maximum performance and integration with relevant biological databases. The CLIMB system is composed of over 7,500 CPU cores of processing power. This makes it the largest single system dedicated to Microbial Bioinformatics research, anywhere in the world. The CLIMB system is not...

4

CLIMB | Cloud Infrastructure for Microbial Bioinformatics

http://www.climb.ac.uk/people

People – CLIMB Cloud Infrastructure for Microbial Bioinformatics. Mark Pallen started academic life as a medical microbiologist, with training in medicine (BA from Cambridge MBBS, MD from London) and laboratory research (PhD in Gordon Dougan’s lab at Imperial College, during which he captained the winning team in University Challenge). Andrew is an Assistant Professor at Warwick Medical School. He has a background in environmental microbiology having completed a PhD at Warwick on "Cyanophages capable...

5

CLIMB | Cloud Infrastructure for Microbial Bioinformatics

http://www.climb.ac.uk/getting-started

Get Started – CLIMB Cloud Infrastructure for Microbial Bioinformatics. To register for CLIMB access, please visit Bryn, the CLIMB user portal. To view user documentation, tutorials and for the community forum visit our Discourse site. This site uses cookies: Find out more.

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lab.loman.net

About · Loman Labs

http://lab.loman.net/about

Research group at the University of Birmingham, fusing cutting-edge sequencing with microbial genomics. Nick works as an Independent Research Fellow in the Institute for Microbiology and Infection. At the University of Birmingham. MicrobesNG is a 5-year, 1.2m BBSRC-funded project to produce a world-leading microbial genome sequencing service and strain archiving resource, which launched at the SGM in March 2015. See the website for further details. Szymon Calus, Research Technician, now doing a PhD with ...

lab.loman.net

2016: The Loman Lab year in Tweets · Loman Labs

http://lab.loman.net/2016/12/31/2016-in-review

Research group at the University of Birmingham, fusing cutting-edge sequencing with microbial genomics. 2016: The Loman Lab year in Tweets. The past is a foreign country well, that’s how I feel about January 2016 looking back today. Definitely some things happened in January, but can’t remember them. So I’m using Twitter Analytics to remind me. This was the month that #researchparasites. Came out, to the horror and amusement of the genomics field:. The logical fallacy of #researchparasites. WHO update on...

lab.loman.net

News · Loman Labs

http://lab.loman.net/news

Research group at the University of Birmingham, fusing cutting-edge sequencing with microbial genomics. Our paper on nanopore assembly was published in Nature Methods. It got lots of attention from the press and was featured as a Nature Reviews Microbiology. We have been collaborating with Jared Simpson in Ontario on a new method for nanopore-only de novo assembly and polishing. We found it was possible to assemble. Our work on nanopore sequencing in outbreaks was recently featured in Wired UK. Article o...

zibraproject.org

A new method for whole Zika virus sequencing

http://www.zibraproject.org/blog/a-new-method-for-whole-zika-virus-sequencing

A new method for whole Zika virus sequencing. Aug 24, 2016. Given that the panels are designed to have a maximum product length of 375 bp it’s obviously not the DNA polymerase that needs that long to extend (usually 1 min/kb) so I figured it must be to allow primer annealing. We thought maybe the primer concentration was very low to create a self-limiting system which balances the abundance of products generated. Fig 1 Results of single-plex PCR scheme. Fig 2 Results of v1 multiplex protocol. To generate...

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CLIMB | Cloud Infrastructure for Microbial Bioinformatics

CLIMB Cloud Infrastructure for Microbial Bioinformatics – WORLD-LEADING MICROBIAL BIOINFORMATICS CYBER-INFRASTRUCTURE. Brought to you by:. The CLIMB project (Cloud Infrastructure for Microbial Bioinformatics) is a collaboration between Warwick, Birmingham, Cardiff and Swansea Universities to develop and deploy a world leading cyber-infrastructure for microbial bioinformatics; providing free. Cloud-based compute, storage, and analysis tools for academic microbiologists in the UK.

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