centerserv.wustl.edu
Links
http://centerserv.wustl.edu/Links.aspx
About the Visionary Donor. Other Local Funding Opportunities. Cognitive, Computational and Systems Neuroscience Curriculum Pathway (CCSN). Cell Biology and Physiology. Ophthalmology and Visual Sciences. Psychological and Brain Sciences. Biology and Biomedical Sciences. Washington University Program in Neuroscience. Specialized Centers of Research and Education. Hope Center for Neurological Disorders. Washington University Pain Center. Center for Clinical Imaging Research. Bernard Becker Medical Library.
stormo.wustl.edu
Stormo Lab Software
http://stormo.wustl.edu/resources.html
Center for Genome Sciences. The following services were developed in our lab and are available for use:. Color-codes CLUSTAL alignment outputs based on individual column percentage makeup. Automated Protein Annotation by Coordinate Evolution. Tool for predicting genes in Chlamydomonas reinhardtii. Web interface for finding DNA and protein patterns. Compare multiple eukaryotic proteomes. Databases and Data files. The following were developed in our lab and are available for use:. Probes for DNA Microarray.
washugb.blogspot.com
WashU EpiGenome Browser: July 2013
http://washugb.blogspot.com/2013_07_01_archive.html
THIS BLOG IS NO LONGER UPDATED and I no longer work on the Browser. Sunday, July 28, 2013. V22 (3 of 3): better track search, and information display. You can quickly find track using the track search. On browser, click "Tracks" and find the search box:. Enter keywords and press "Search" or hit Enter. To use multiple keywords, join them by "AND". To see information of a track, right click and select Information:. Track information will be shown as various categories:. V22 (2 of 3): public datahubs. To se...
washugb.blogspot.com
WashU EpiGenome Browser: September 2013
http://washugb.blogspot.com/2013_09_01_archive.html
THIS BLOG IS NO LONGER UPDATED and I no longer work on the Browser. Monday, September 23, 2013. V24 (3 of 3): facet panel. Facet panel" is a meaningful way to present large track set using metadata annotation. Version 24 features much improved facet table function. Improved user interface design. Unified support on both native and custom metadata vocabularies. Find the facet panel. At the browser, click "Tracks" "Experimental assay tracks". Following panel will be shown (example from hg19):. The metadata...
washugb.blogspot.com
WashU EpiGenome Browser: May 2013
http://washugb.blogspot.com/2013_05_01_archive.html
THIS BLOG IS NO LONGER UPDATED and I no longer work on the Browser. Friday, May 31, 2013. V18: new page look, BAM file support. Version 18 code release features a lot of improvements, including new look of user interface throughout the entire browser, and most importantly, the support of BAM files. You can get the source code from dropbox. Or from our web site. Open up the browser and click "CustomTk" button in the toolbox to show this:. Click button "BAM" to and we're ready to submit a custom BAM track:.
washugb.blogspot.com
WashU EpiGenome Browser: January 2014
http://washugb.blogspot.com/2014_01_01_archive.html
THIS BLOG IS NO LONGER UPDATED and I no longer work on the Browser. Friday, January 31, 2014. From version 32, you are now able to create a custom metadata vocabulary and share/reuse it among your data hubs (instead of having to keep multiple copies over many hubs). As an example, we put following JSON contents into a text file to define a metadata vocabulary:. Dna methylation":["aa","bb","cc"],. Histone mark":["dd","ee"],. Small RNA":["dd","bb"],. Tag:"My shared metadata",. When a shared metadata is loa...
washugb.blogspot.com
WashU EpiGenome Browser: March 2014
http://washugb.blogspot.com/2014_03_01_archive.html
THIS BLOG IS NO LONGER UPDATED and I no longer work on the Browser. Saturday, March 22, 2014. V35: hammock tracks for richly annotated genomic features. The hammock tracks is a new track type for displaying richly annotated genomic feature on the browser. It's simple and straight, succinct by having only 4 columns, versatile for the JSON field, and can do awesome things. The current format specification is here:. Http:/ wiki.wubrowse.org/Hammock. The same repeat track as above, displayed in " barplot.
washugb.blogspot.com
WashU EpiGenome Browser: November 2013
http://washugb.blogspot.com/2013_11_01_archive.html
THIS BLOG IS NO LONGER UPDATED and I no longer work on the Browser. Saturday, November 30, 2013. V30: custom gene tracks. This new gene track mechanism also supports custom gene tracks:. In above image two gene tracks are shown. The one on top is the native hg19 RefSeq gene track. The green track beneath it is an replica custom track. You can see from the details about this track in the menu box. An example custom gene track can be found in this hg19 data hub, look for the word "hammock":. Thus it is exc...
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