nextgenseq.blogspot.com
Next-Gen Sequencing
http://nextgenseq.blogspot.com/2015/07/i-am-writing-new-lectures-and.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Jul 29, 2015. I am writing new lectures and organizing a lot of teaching material to teach 4 (! Https:/ drive.google.com/open? We are also planning to make Screencast type videos of most of the lectures, which get dumped on YouTube. I will try to find some sensible way of organizing them and sharing via this NGS blog. Subscribe to: Post Comments (Atom). View my complete profile. Accurate...
nextgenseq.blogspot.com
Next-Gen Sequencing: New 'Next-Gen Seq 2' book is at the printer
http://nextgenseq.blogspot.com/2015/05/new-next-gen-seq-2-book-is-at-printer.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. May 28, 2015. New 'Next-Gen Seq 2' book is at the printer. The second edition of the Next-Generation Sequencing Informatics. Book (that I edit) is at the printer and available for pre-order at Cold Spring Harbor Press. We think it will ship on June 30th, maybe a bit sooner. Here is the official publication blurb:. Next-Generation DNA Sequencing Bioinformatics, Second edition,. Addresses ...
nextgenseq.blogspot.com
Next-Gen Sequencing: September 2014
http://nextgenseq.blogspot.com/2014_09_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Sep 10, 2014. Introduction to Biostatistics and Bioinformatics course at NYUMC. The lectures will be posted to YouTube each week. Here are our first ones from yesterday:. Intro Lecture/Data Visualization: http:/ youtu.be/YDUPzq7i49U. Python programming #1: http:/ youtu.be/r2N-thn7j4o. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines).
nextgenseq.blogspot.com
Next-Gen Sequencing: July 2015
http://nextgenseq.blogspot.com/2015_07_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Jul 31, 2015. Coffee Berry Borer genome published. Our paper on the de novo. Genome sequence and annotation of the Coffee Berry Borer (a beetle) is published today in Nature Scientific Reports. We are of course hoping that these genes can be used as some sort of target for control of the pest, which causes something like a billion $ of annual damage worldwide to our beloved coffee. Http:...
nextgenseq.blogspot.com
Next-Gen Sequencing: May 2015
http://nextgenseq.blogspot.com/2015_05_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. May 28, 2015. New 'Next-Gen Seq 2' book is at the printer. The second edition of the Next-Generation Sequencing Informatics. Book (that I edit) is at the printer and available for pre-order at Cold Spring Harbor Press. We think it will ship on June 30th, maybe a bit sooner. Here is the official publication blurb:. Next-Generation DNA Sequencing Bioinformatics, Second edition,. Addresses ...
nextgenseq.blogspot.com
Next-Gen Sequencing: August 2014
http://nextgenseq.blogspot.com/2014_08_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Aug 20, 2014. That would perhaps serve as preliminary data to bring in showers of additional funding for follow-up studies]. Collect both genomic and RNA sequence data. These two data types are extremely complementary. Many earlier de novo. From Illumina product literature). I like the SOAPdenovo. I visualize the bioinformatics work in two parts. First. Use the extremely useful. To conve...
nextgenseq.blogspot.com
Next-Gen Sequencing: August 2013
http://nextgenseq.blogspot.com/2013_08_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Aug 22, 2013. Changes in software can change results. I gave a talk this week at the NGx conference in Providence RI. Thanks to MaryAnn Brown for inviting me and Chris Dwan for chairing the session. I am trying to share the slides from my talk as a "Google Slides" document at this URL:. Https:/ docs.google.com/presentation/d/1UKrs2Cz8KJEXALooCbvfHKEo3IaT2fZ9-uI4nWUg VA/edit? Includes man...
nextgenseq.blogspot.com
Next-Gen Sequencing: September 2013
http://nextgenseq.blogspot.com/2013_09_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Sep 26, 2013. In a different RNA-seq project on pig (a model system for cardiology), we ran the standard TopHat/Cufflinks pipeline using the RefSeq gene annotation from the Illumina IGENOMES project (a convenient way to get FASTA, GTF, and Bowtie index files for many genomes: http:/ support.illumina.com/. When we looked at the alignment QC using the CollectRnaSeqMetrics from the Picard.
nextgenseq.blogspot.com
Next-Gen Sequencing: May 2013
http://nextgenseq.blogspot.com/2013_05_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. May 13, 2013. Individual chapters of the Next Generation DNA Sequencing book are now on sale as downloads from the Cold Spring Harbor Press website:. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). Individual chapters of the Next Generation DNA Seq. List of Blogs relevant to NG Seq. The Tree of Life. We have released the latest funding...
nextgenseq.blogspot.com
Next-Gen Sequencing: March 2013
http://nextgenseq.blogspot.com/2013_03_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Mar 8, 2013. Genotyping on MiSeq with overlapping paired-end reads. Our Illumina MiSeq can now do 2 X 250 bp paired-end reads. Program uses similar math to calculate Q-scores for overlapping regions, so we are going to use that for the first pass on this data. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). The Tree of Life. When I sta...
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