nextgenseq.blogspot.com
Next-Gen SequencingA working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics.
http://nextgenseq.blogspot.com/
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics.
http://nextgenseq.blogspot.com/
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Next-Gen Sequencing | nextgenseq.blogspot.com Reviews
https://nextgenseq.blogspot.com
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics.
nextgenseq.blogspot.com
Next-Gen Sequencing: March 2013
http://nextgenseq.blogspot.com/2013_03_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Mar 8, 2013. Genotyping on MiSeq with overlapping paired-end reads. Our Illumina MiSeq can now do 2 X 250 bp paired-end reads. Program uses similar math to calculate Q-scores for overlapping regions, so we are going to use that for the first pass on this data. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). The Tree of Life. When I sta...
Next-Gen Sequencing: October 2013
http://nextgenseq.blogspot.com/2013_10_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Oct 26, 2013. A bit more on genome annotation. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). A bit more on genome annotation. List of Blogs relevant to NG Seq. The Tree of Life. Viruses viruses viruses viruses viruses viruses viruses. TimeSeq – detect biologically relevant DE genes and gene sets in time course RNA-Seq data. A group o...
Next-Gen Sequencing: Password hell
http://nextgenseq.blogspot.com/2015/02/password-hell.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Feb 9, 2015. Follow instructions very carefully or your helpful technology tools will gang up against you. Happy Ice Storm Day from New York. May 16, 2015, 12:34:00 PM. Subscribe to: Post Comments (Atom). View my complete profile. Vendors (NG Seq machines). List of Blogs relevant to NG Seq. The Tree of Life. Viruses viruses viruses viruses viruses viruses viruses. MIRA for Early Stage In...
Next-Gen Sequencing: Next Gen Sequencing Vendors
http://nextgenseq.blogspot.com/2008/10/next-gen-sequencing-vendors.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Oct 19, 2008. Next Gen Sequencing Vendors. A list of the vendors of next-generation, high-throughput DNA sequencing machines. . No editorializing here, there will be comment pages for each of these. . The New New Thing:. Plans to ship first unit in 2010]. An analysis of PacBio by David Hamilton. Feb 10, 2008. The Polonator (Dover Systems aka George Church and Co.). Jun 6, 2014, 5:42:00 PM.
Next-Gen Sequencing: February 2015
http://nextgenseq.blogspot.com/2015_02_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Feb 9, 2015. Follow instructions very carefully or your helpful technology tools will gang up against you. Happy Ice Storm Day from New York. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). List of Blogs relevant to NG Seq. The Tree of Life. Viruses viruses viruses viruses viruses viruses viruses. A New Era for MassGenomics. A group of...
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Training Archives - OMIXON - NGS for HLA
http://www.omixon.com/category/training
OMIXON – NGS for HLA. Skip to primary content. Skip to secondary content. 7 Jul 2016 11:44 AM. Learn Me Video – Identification and Investigation of Novel Alleles. Welcome to the latest video in Omixon’s Learn Me Video Series. In this short video, we’re going to guide you through the identification and investigation of novel alleles. Alleles that are not present in the IMGT database. To watch the previous Learn Me videos, and subscribe to our YouTube channel. 14 Jun 2016 2:37 PM. 12 May 2016 2:09 PM.
Diversity of MHC Genes in the 1000 Genomes Dataset - OMIXON - NGS for HLA
http://www.omixon.com/diversity-of-mhc-genes-in-the-1000-genomes-dataset
OMIXON – NGS for HLA. Skip to primary content. Skip to secondary content. 27 Jul 2015 11:34 AM. Diversity of MHC Genes in the 1000 Genomes Dataset. Tünde Vágó, Péter Tóth, Tim Hague, Szilveszter Juhos. The estimated diversity of genes studied is presented. Differences in ethnic groups can be found not only in highly polymorphic HLA genes, but also in other, more conserved loci. For more information about our scientific posters, please visit the Documents. Omixon Celebrates a Successful EFI 2015. Omixon s...
kriszta.katona - OMIXON - NGS for HLA
http://www.omixon.com/author/kriszta-katona
OMIXON – NGS for HLA. Skip to primary content. Skip to secondary content. Author Archives: kriszta.katona. 12 Aug 2016 2:27 PM. Books as Furniture – Algorithm Development in Practice. Or lying on them…. Or sleeping on them…. 8230;you get it. So what helps, what is the magic bullet? Seriously there are good practices. There are also signs that you can pay attention to. There are patterns in your iterations while jogging around the same problem for days, weeks and months – these could be also...You can hac...
Estudar Computação: O que é a Maratona de Programação?
http://www.estudarcomputacao.com/2011/09/o-que-e-maratona-de-programacao.html
Blog sobre o estudo da Ciência da Computação, pra quem gosta de pesquisar e aprender por conta própria. Terça-feira, 20 de setembro de 2011. O que é a Maratona de Programação? Estávamos devendo um post especial sobre a Maratona de Programação. Pois bem. Ei-lo aqui. Fomos ao Instituto de Matemática e Estatística (IME) da USP durante a seletiva (2011) para a Maratona de Programação. Além de filmarmos um pouco do evento, entrevistamos:. Parte 2 (adicionada em 11/10/2011). Parte 3 (adicionada em 28/10/2011).
perl random number nomal distributation using matlab | Yongjin's Bioinformatics Blog
https://hrbrocky.wordpress.com/2012/03/25/perl-random-number-nomal-distributation-using-matlab
Yongjin's Bioinformatics Blog. Notes and thoughts in Bioinformatics. GFF3 file used in TopHat and Cufflink. BWA is more sensentive than Bowtie? Perl random number nomal distributation using matlab. March 25, 2012. 8212;—————————————————–. This is a matlab script. Rn=round(random(‘normal’,256,512,1000000,1) ;. Rn(find(rn 64) =[];. Rn(find(rn 1024) =[];. Fid=fopen(`myfile.txt`,’w’);. Fprintf(fid,’%d n’,rn);. Matlab -nodesktop -nosplash -nojvm -r “run ./$FileName;quit;”. View all posts by Rocky →.
Sequencing Informatics | Next Generation DNA Sequencing Resources
http://seqinformatics.com/index.php
Next Generation DNA Sequencing Resources. Cloud Computing for RNA-seq. Next-Generation DNA Sequencing Informatics is Available. Stuart Brown’s book, Next-Generation DNA Sequencing Informatics, published by Cold Spring Harbor Laboratory Press, is now available here. This website contains tutorials, guides to supplies and software for Next-Generation DNA Sequencing, with more to come. Next-Generation DNA Sequencing Informatics. Provides a thorough introduction to the necessary informatics methods and tools...
Sequencing Informatics | Next Generation DNA Sequencing Resources
http://www.seqinformatics.org/index.php
Next Generation DNA Sequencing Resources. Cloud Computing for RNA-seq. Next-Generation DNA Sequencing Informatics is Available. Stuart Brown’s book, Next-Generation DNA Sequencing Informatics, published by Cold Spring Harbor Laboratory Press, is now available here. This website contains tutorials, guides to supplies and software for Next-Generation DNA Sequencing, with more to come. Next-Generation DNA Sequencing Informatics. Provides a thorough introduction to the necessary informatics methods and tools...
Omixon Celebrates a Successful EFI 2015 - OMIXON - NGS for HLA
http://www.omixon.com/omixon-celebrates-a-successful-efi-2015
OMIXON – NGS for HLA. Skip to primary content. Skip to secondary content. 7 May 2015 4:44 PM. Omixon Celebrates a Successful EFI 2015. EFI 2015, Success for All. We had a tremendous experience last week in the amazingly picturesque city of Geneva Switzerland – the backdrop for EFI 2015, facilitated by Prof. Jean-Marie Tiercy and Dr. Jean Villard and their team of professional event managers. Thank you again to the EFI 2015 organisers, we certainly look forward to seeing you in Kos, Greece for 2016. NGS W...
Blog | | Omixon
http://www.omixon.com/blog
OMIXON – NGS for HLA. Skip to primary content. Skip to secondary content. 12 Aug 2016 2:27 PM. Books as Furniture – Algorithm Development in Practice. Or lying on them…. Or sleeping on them…. 8230;you get it. So what helps, what is the magic bullet? If there is any well, if I would know the answer then probably I could go on holiday for the rest of my life just after documenting it. Or trying to survive the attacks of maffia attempting to make money out of this exceptional, wonderful secret. You can expl...
Estudar Computação: Pipeline de exoma completo - parte 1 (FastQC e qualidade das sequências)
http://www.estudarcomputacao.com/2014/11/pipeline-de-exoma-completo-parte-1.html
Blog sobre o estudo da Ciência da Computação, pra quem gosta de pesquisar e aprender por conta própria. Quinta-feira, 27 de novembro de 2014. Pipeline de exoma completo - parte 1 (FastQC e qualidade das sequências). Parte 1: controle de qualidade das sequências. Autor: Leandro Lima llima@ime.usp.br. Vamos continuar usando o diretório padrão. Utilizado na parte 0 do pipeline. Cd' muda o diretório de trabalho para $mydir. Agora vamos criar um diretório específico. Para guardar as ferramentas. Sequence qual...
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Next-Gen Sequencing
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Jan 31, 2018. Genome Coverage from BAM file. There are many excellent tools for analysis of Next Gen Sequencing data in the standard BAM alignment format so I was surprised how difficult it was for me to get a nice graph of genome coverage. This will be trivial for a lot of hard core bioinformatics coders, so just move along if you are bored/annoyed. Here is what mine looked like:. PG ID...
Next Generation Sequencing Courses
Beginners Courses in Next Generation Sequencing. To scientists and clinicians with little or no previous experience by. Organising small intensive courses in various aspects of next generation sequencing. Measurement and analysis of mRNAs, long non-coding RNAs and microRNAs using next generation sequencing (RNASeq). The rapid reductions in the price of sequencing has meant that RNA sequencing (RNAseq) is replacing microarrays as the option of choice for measuring the transcriptome. Friday 19th May 2017 -.
