gpmdb.rockefeller.edu
Redirect to GPMThe Global Proteome Machine Organisation. The organisation supports open source bioinformatics tools for large scale proteomics and systems biology
http://gpmdb.rockefeller.edu/
The Global Proteome Machine Organisation. The organisation supports open source bioinformatics tools for large scale proteomics and systems biology
http://gpmdb.rockefeller.edu/
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Redirect to GPM | gpmdb.rockefeller.edu Reviews
https://gpmdb.rockefeller.edu
The Global Proteome Machine Organisation. The organisation supports open source bioinformatics tools for large scale proteomics and systems biology
gpmdb.rockefeller.edu
MRM: characteristic peptides for a protein
http://gpmdb.rockefeller.edu/mrm/index.html
Welcome to MRM, the largest database of peptides observed by tandem mass spectrometry. Based on the analysis of over 1,000,000,000 mass spectra, MRM is the definitive source for information about the peptides found in proteomics experiments. And find your peptides:. Waiting for GPM . Waiting for Twitter .
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Pandora
http://pandora.cs.huji.ac.il/index.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Welcome to Pandora version 4.2! In order to study of proteins you can choose from the top menubar:. Study a set of proteins that share an annotation. Study your own set of proteins including quantitative data. Blast a sequence and view the results in PANDORA. Match list of mass spectrometry-derived (MS) peptides to the corresponding proteins and analyze these proteins in PANDORA.
Pandora
http://pandora.cs.huji.ac.il/about.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Pandora version 4.2. Department of Biological Chemistry, Institute of Life Sciences. Hebrew University, Jerusalem, Israel. School of Computer Science and Enigineering. Hebrew University, Jerusalem, Israel. You can contact us through this mail form. Kaplan N, Vaaknin A and Linial M. (2003). PANDORA: keyword-based analysis of protein sets by integration of annotation sources.
Pandora
http://pandora.cs.huji.ac.il/userset.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Study your own set of proteins ( see help. For further information on file formats etc, see the help sections on input methods. And on user properties. Or you may also load sample data:. Simple list of Protein IDs. Protein IDs with user properties (CSV). Protein IDs with user properties (tab delimited). SwissProt/TrEMBL protein accession numbers. GenBank gene accession numbers.
PROWL
http://prowl.rockefeller.edu/prowl/pepfrag.html
Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. 1230 York Avenue,. New York, NY 10021. For the Mass Spectrometric. Examples: A singly charged peptide. A doubly charged peptide. Maximum number of proteins in result:. Maximum number of cleavage sites not cleaved in a peptide:. Mass of parent peptide. Maximum number of phosphorylations. If you know at what amino acids the fragmentation occurs (c-terminal side), list them here:. And mark the peptides with an 'x' following the mass.
PROWL
http://prowl.rockefeller.edu/prowl/peptidemap.html
Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. 1230 York Avenue,. New York, NY 10021. For the Mass Spectrometric. 1 * 10 * 20 * 30 * 40 * 50 1. Aspartic acid (Asp,D). Glutamic acid (Glu,E). Do not cleave near Proline. Style="WIDTH: 105px; HEIGHT: 24px" LANGUAGE=javascript onclick="return chemistry userdefined addenzyme onclick()". Performic acid (Cys O3). Performic acid (Met O2). Performic acid (Met O). Performic acid (Cys O3). Performic acid (Met O2). Performic acid (Met O). First chain = 0).
Pandora
http://pandora.cs.huji.ac.il/keyword.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Study a set of proteins that share a keyword/annotation:. You can study all proteins that share a certain function, structure, biological pathway, cellular localization, etc ( see help. Or part of keyword / auto-completion with 4 characters). Updated Jan. 31st 2010 - Pandora. The Hebrew University of Jerusalem. This site is best viewed with Firefox.
Pandora
http://pandora.cs.huji.ac.il/help.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Was developed in order to allow in-depth biological analysis of such large protein sets. This is obtained through annotation analysis, with the implementation of two main ideas: representation of all protein-keyword relations with a Concept DAG (Directed Acyclic Graph). Is based on the proteins that appear in the UniProtKB/Swiss-Prot database and UniProtKB/TrEMBL. Is based on t...
PROWL
http://prowl.rockefeller.edu/prowl/proteininfo.html
Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. 1230 York Avenue,. New York, NY 10021. For the Mass Spectrometric. Analyze Amino Acid Sequence.
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GPMDB Proteome Database
The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists. Search by protein description keywords. Returns results with either. Mark with a plus : statin. Enter ...
Redirect to GPM
If you are not immediately redirected to The Global Proteome Machine MRM home page, click here.
GPMDB Proteome Database
The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists. Search by protein description keywords. Returns results with either. Mark with a plus : statin. Enter ...
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