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Leigh Brown HIV & Flu Research Group; University of Edinburgh: Home

HIV and Flu Research Group. SCHOOL OF BIOLOGICAL SCIENCES. The scale of the global HIV pandemic is difficult to grasp. UNAIDS. If you would like to learn more about our research please go to Research. If you would like to contact any member of the group please go to People.

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Leigh Brown HIV & Flu Research Group; University of Edinburgh: Home | hiv.bio.ed.ac.uk Reviews

https://hiv.bio.ed.ac.uk

HIV and Flu Research Group. SCHOOL OF BIOLOGICAL SCIENCES. The scale of the global HIV pandemic is difficult to grasp. UNAIDS. If you would like to learn more about our research please go to Research. If you would like to contact any member of the group please go to People.

INTERNAL PAGES

hiv.bio.ed.ac.uk hiv.bio.ed.ac.uk
1

Leigh Brown HIV Research Group; University of Edinburgh: Recent Publications

http://hiv.bio.ed.ac.uk/newpubs.html

SCHOOL OF BIOLOGICAL SCIENCES. Publications Publications before 2000. Yebra G, Kalish ML, Leigh Brown AJ. Reconstructing the HIV-1 CRF02 AG and CRF06 cpx epidemics in Burkina Faso and West Africa using early samples. Infect. Genet. Evol. 2016. link to journal article. J Infect Dis 2015; doi: 10.1093/infdis/jiv758. link to journal article. J Gen Virol. 96: 1890-1898. 2015 link to journal article. Plos One 2014 Sep 16;9:e107330. link to journal article. J AIDS. in press 2014. link to journal article. Hue S...

2

Leigh Brown HIV Research Group; University of Edinburgh: People

http://hiv.bio.ed.ac.uk/people.html

SCHOOL OF BIOLOGICAL SCIENCES. Prof Andrew Leigh Brown. Room 66, Ashworth Laboratories, West Mains Road, Edinburgh,. Room 65, Ashworth Laboratories, West Mains Road, Edinburgh,. Room 65, Ashworth Laboratories, West Mains Road, Edinburgh,. Room 65, Ashworth Laboratories, West Mains Road, Edinburgh,. UK HIV Resistance Study. Dr Sergei Kosakovsky Pond. Former students and post-docs.

3

Leigh Brown HIV Research Group; University of Edinburgh: Opportunities

http://hiv.bio.ed.ac.uk/opportunities.html

SCHOOL OF BIOLOGICAL SCIENCES. MSc training in genomics: this department runs the MSc in Quantitative Genetics and Genome analysis which is an outstanding preparation for PhD studies in Genetics and Genomics. Further information about the course can be found here.

4

Leigh Brown HIV Research Group; University of Edinburgh: Home

http://hiv.bio.ed.ac.uk/index.html

SCHOOL OF BIOLOGICAL SCIENCES. The scale of the global HIV pandemic is difficult to grasp. UNAIDS. If you would like to learn more about our research please go to Research. If you would like to contact any member of the group please go to People.

5

Leigh Brown HIV Research Group; University of Edinburgh: Home

http://hiv.bio.ed.ac.uk/software.html

SCHOOL OF BIOLOGICAL SCIENCES. Picking and Describing HIV Clusters in Phylogenetic Trees. A tool combination for the analysis of phylogenetic clusters of nucleotide sequences. The most recent versions of the ClusterPicker and ClusterMatcher are always on our GitHub page. Right-click a file and 'Save link as' to download). Download program ClusterPickerGUI 1.2.3.jar. Download program ClusterPicker 1.2.3.jar. Download manual ClusterPicker.pdf. Download program ClusterMatcher.jar. Released under GNU GLPv3.

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emmahodcroft.com emmahodcroft.com

TreeCollapserCL4: Removing Doubt from Your Trees! Collapse Trees by Bootstrap

http://emmahodcroft.com/TreeCollapseCL.html

Roots, measures, and collapses phylogenetic trees to polytomies based on bootstrap value! This command-line Java program takes in Nexus/Newick-style phylogenetic tree code (including files exported from FigTree) that includes bootstrap values and branch lengths, and analyses them using any combination of three main functions:. Measuring the length and other attributes of the tree. Stay informed about updates to TreeCollapse4 - join the mailing list! Updates Since v3.2:. Updates Since v3.1.2:. PLEASE NOTE...

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Feedback Page

http://emmahodcroft.com/feedback.html

Unfortunately this feedback form has been flooded with spam from robots, and so many real messages were filtered as spam and possibly lost! I've tried to solve this, but if you don't get an answer within a couple of weeks (I travel quite a lot), it might be worth emailing me directly. "@ed.ac.uk" is the University of Edinburgh email ending, and most emails use Firstname.Lastname, if you catch my drift. I am a spam robot. Design from HTML5webtemplates.co.uk. Design downloaded from free website templates.

emmahodcroft.com emmahodcroft.com

PareTree 1.0: Remove Sequences, Bootstraps, and Branch Lengths From Your Trees!

http://emmahodcroft.com/PareTree.html

PareTree 1.0.2. This command-line Java program allows users to ‘pare’ down their tree by either removing unwanted leaves (tip-nodes), removing bootstrap information from the tree, or removing branch lengths from the tree or any combination. Both of these functions can be accomplished in languages like R or Perl, but Java allows very large trees to be pared down quickly, efficiently, and easily! See 'Program Details' for more. It is worth mentioning that the total root-to-tip distance is kept the same for...

emmahodcroft.com emmahodcroft.com

Word Counter

http://emmahodcroft.com/worder.html

Note of caution: If your parenthesis don't line up (if you don't close every one you open) this program won't work well. Also, If you have an opening parenthesis inside letters (ex: a(dibke ) it will not exclude what's in that parenthesis. Also, letters right after a closing parenthesis will not be counted (ex: )eed ). Generated by NetBeans IDE by Emma Hodcroft. Code never lies, comments sometimes do. Design from HTML5webtemplates.co.uk. Design downloaded from free website templates.

emmahodcroft.com emmahodcroft.com

TreeCollapserCL3.2: Removing Doubt from Your Trees! Collapse Trees by Bootstrap

http://emmahodcroft.com/TreeCollapseCL3.html

This version of TreeCollapseCL has a bug in the collapsing algorithm and it is not recommended that you use it! Please use the new, updated TreeCollapseCL4. Roots, measures, and collapses phylogenetic trees to polytomies based on bootstrap value! This command-line Java program takes in Nexus/Newick-style phylogenetic tree code (including files exported from FigTree) that includes bootstrap values and branch lengths, and analyses them using any combination of three main functions:. Corrected a minor colla...

emmahodcroft.com emmahodcroft.com

TreeCoder

http://emmahodcroft.com/TreeCoder.html

It is recommended that you print off the tree you'd like to replicate, if possible, so you can write on it. Then label the branch points however you like - simple numbers or letter will work best. Here I've labeled the branch points 'a' and 'b':. Now, simply define each branch point by stating what it contains. It is *very important*. Use a branch point until you have define what it contains! In this example, it means not defining 'b' before you have defined 'a':. A - Start from the top of the tree, and ...

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HIV Outreach, Prevention & Education (HOPE) - fighting stigma and raising awareness - AACI

HIV Outreach, Prevention and Education (HOPE). Fighting stigma and raising awareness. News & Events. Drugs & Alcohol. Welcome to our page! The HOPE Program is moving to AACI’s office at:. 749 Story Rd, Suite 50, San Jose, CA. As of December 1 2015, our location at 2400 Moorpark Ave is closed. In the meantime, please visit our program at the Billy DeFrank LGBTQ Community Center (938 The Alameda, San Jose, CA 95126) for free HIV testing. Check out our other volunteer opportunities! Keep up with AACI news!

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Leigh Brown HIV & Flu Research Group; University of Edinburgh: Home

HIV and Flu Research Group. SCHOOL OF BIOLOGICAL SCIENCES. The scale of the global HIV pandemic is difficult to grasp. UNAIDS. If you would like to learn more about our research please go to Research. If you would like to contact any member of the group please go to People.

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Choice Disability trial | Just another Ciet Research Sites site

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