Bujnicki lab. Our group is involved in theoretical and experimental research on nucleic acids and proteins. The current focus is on RNA sequence-structure-function relationships (in particular 3D modeling), RNA-protein complexes, and enzymes acting on RNA.
http://iimcb.genesilico.pl/
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Bujnicki lab - Home | iimcb.genesilico.pl Reviews
https://iimcb.genesilico.pl
Bujnicki lab. Our group is involved in theoretical and experimental research on nucleic acids and proteins. The current focus is on RNA sequence-structure-function relationships (in particular 3D modeling), RNA-protein complexes, and enzymes acting on RNA.
iimcb.genesilico.pl
ModeRNA
http://iimcb.genesilico.pl/modernaserver
A server for RNA structure modeling and analysis. By Magdalena Rother, Kaja Milanowska, Tomasz Puton, Kristian Rother, and Janusz M. Bujnicki. Http:/ iimcb.genesilico.pl/modernaserver/. What is the ModeRNA server? This service is based on the ModeRNA software. For RNA 3D structure prediction, analysis, and manipulation. Currently, the server allows you to:. Requires a pairwise sequence alignment and a structural template). Looks for potential templates using ParAlign and Rfam). Clean up a structure.
RNA Bricks - a database of RNA 3D structure motifs and their interactions
http://iimcb.genesilico.pl/rnabricks
RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. Currently you can find here over 2600 RNA structures and RNA-protein complexes from the PDB (see statistics. For details). We hope that your favorite ones are in. If not, keep visiting us - the database is updated weekly. With any comments, suggestions or bug-reports. The database...
ModeRNA - Comparative Modeling of RNA Structures
http://iimcb.genesilico.pl/moderna
A program for comparative RNA modeling. By Magdalena Rother, Kristian Rother, Tomasz Puton, Janusz Bujnicki. Http:/ iimcb.genesilico.pl/moderna/. C) 2009 Available under the conditions of the GPL License. Apart from that, ModeRNA offers a multitude of functions to examine and modify RNA structure files. ModeRNA can be integrated into other programs via Python scripting. If you wish to learn the basics of ModeRNA, we recommend that you read the Tutorial. And/or the Frequently Asked Questions. 2010/07/21 -...
CompaRNA - on-line benchmarks of RNA structure prediction methods
http://iimcb.genesilico.pl/comparna
A server for continuous benchmarking of automated methods for RNA structure prediction. By Tomasz Puton, Kristian Rother, Łukasz Kozłowski, Janusz M. Bujnicki. Http:/ iimcb.genesilico.pl/comparna/. C) 2013 Adam Mickiewicz University in Poznań. C) 2013 International Institute of Molecular and Cell Biology in Warsaw. CompaRNA uses both PDB. Databases to prepare benchmarking datasets. Based on them, CompaRNA calculates a set of rankings. For various methods to show their performance. Sept 26, 2013. A bug in...
SpliProt3D - database of structures (and models) of proteins of the human spliceosome
http://iimcb.genesilico.pl/SpliProt3D/home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. Features of protein regions in the SpliProt3D database. Features of models in the SpliProt3D database. How to cite SpliProt3D database? We carried out a systematic, comprehensive structural bioinformatics analysis of the human spliceosomal proteome. We predicted ordered and disordered regions, established a non-redundant set of experimental models...
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PyRy3D - Home
http://genesilico.pl/pyry3d
PyRy3D is a user-friendly computational method for building structural models of mutltisubunit macromolecular complexes by a hybrid approach. A software tool for modeling of large macromolecular complexes. PyRy3D server is available! We encourage you to run modeling tasks with our web server. Go to PYRY SERVER subsite or follow the link. Meet us at PyRy3D workshops! 1 We are pleased to invite you to participate in the workshop "Structural Modeling for Large Macromolecular Complexes" (second edition).
NPDock
http://genesilico.pl/NPDock
NPDock docks protein (green) to nucleic acids (red). Example: Trm14 (cartoon) tRNA (sticks). Example: Trm14 (cartoon) tRNA (cartoon). NPDock (Nucleic acid-Protein Dock) is a web server for modeling of RNA-protein and DNA-protein complex structures. It combines (1) GRAMM for global macromolecular docking, (2) scoring with a statistical potential, (3) clustering of best-scored structures, and (4) local refinement. NPDock a web server for protein-nucleic acid docking. Nucleic Acid Research (Web Server Issue).
GDFuzz3D: protein 2D map to 3D structure retrieval service
http://genesilico.pl/gdserver/GDFuzz3D
GDFuzz3D: protein 2D map to 3D structure retrieval service. Fuzzy or binary contact map (CASP RR format, plain text):. Input should be in plain text, CASP RR format, see example input. Input text should contain amino acid sequence entries (single-letter). Amino acid records can be raw or preceded by SEQRES tag (maximum number of amino acids per row: 50). No more than 400 amino acids, only standard 20 amino acid letters are allowed. GDFuzz3D is designed to work on predicted maps for single-domain proteins.
Science Europe - Life sciences Members
http://www.scienceeurope.org/scientific-committees/Life-sciences/Life-sciences-home
Policy at Science Europe. Open Access to Scientific Publications. Research Policy and Programme Evaluation. Gender and Diversity Working Group. The Global Research Council. GRC European Regional Meeting 2012. GRC European Regional Meeting 2013. Documents of the Humanities Committee. Documents of the Social Science Committee. Documents of the Life Science Committee. Documents of the Medical Science Committee. Documents of the Engineering and Technical Sciences. Documents of the Physical Sciences Committee.
MetaLocGramN - a method (meta-server) for subcellular localization prediction of Gram-negative proteins
http://genesilico.pl/MetaLocGramN
The MetaLocGramN is a method for subcellular localization prediction. Http:/ iimcb.genesilico.pl/MetaLocGramN/result/775191. Magnus M, Pawlowski M, Bujnicki JM (2012) MetaLocGramN: a meta-predictor of protein subcellular localization for Gram-negative bacteria BBA - Proteins and Proteomics. Http:/ www.sciencedirect.com/science/article/pii/S1570963912001185. We highly recommend to use our service via MetaLocGramN client (Soap client for MLGN). The client can be downloaded from our GitHub repository. The M...
QA-RecombineIt
http://genesilico.pl/qarecombineit/intro.html
Data Point Highlighting, Tooltips and Cursor Tracking jqPlot. A web server for Quality Assessment and Recombination of protein models. The purpose of using QA-RecombineIt. When I can use QA-RecombineIt? How does the QA-RecombieneIt works? The purpose of using QA-RecombineIt. When I can use QA-RecombineIt? In general, our method can be successfully applied to any case of homology modeling (see official CASP9 benchmarkfor TMB and TMB/FM modelling. Out method - recombineIt was ranked the 4th). Our server pr...
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Bujnicki lab - Home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. We developed a method for 3D homology modeling of RNA structures. It requires a pairwise sequence alignment and a structu...
Homepage - IIMCB
National Science Centre grants for IIMCB scientists. Prof Janusz M. Bujnicki, Dr. Marcin Nowotny. And Dr. Joanna Gruszczyńska-Biegała are laureates of National Science Centre (NCN) competitions. Prof Janusz Bujnicki as a Polish Representative to the European Science Advisors Forum (ESAF). EMBO Installation Grant for Wojciech Pokrzywa. IIMCB lecture hall, 012. Wojciech Pokrzywa, PhD. Chaperone-directed ubiquitylation maintains proteostasis at the expense of longevity. IIMCB lecture hall, 012. Chaperone-di...
IIMC-Belgium
Notice: Undefined variable: mosConfig site name in /opt/www/vs09005/web/www.iimcbelgie.be/templates/snappa/index.php on line 116. Gezocht: Ziekenhuisbedden voor het IIMC:. Het IIMC zoekt oude ziekenhuisbedden voor de kliniek in Kolkata. Er zal een container vanuit België verstuurd worden. Gelieve contact op te nemen met:. Overlijden Dr. Gysen. Nieuw dak Bharpara school. Dankzij de hulp van de Belgische vrijwilligers werd het dak van de school van Bharpara, wat vernield was door een hagelstorm, hersteld.
IIMC Entrance Counselling
An Indian Institute of Mass Communication Alumni Association Initiative. Click here for Myspace Layouts. Tuesday, May 26, 2015. Question ADPR 2014/ JPEG File. Indian Institute of Mass Communication. Question OJ 2014/ JPEG File. Indian Institute of Mass Communication. Question RTV 2014/ JPEG File. Indian Institute of Mass Communication. Question HJ-EJ/ 2014/ JPEG File. Labels: English Journalism Dept. Indian Institute of Mass Communication. Thursday, July 17, 2014. Didn't get into Delhi. What now? Truly, ...
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