merolae.biol.s.u-tokyo.ac.jp

Cyanidioschyzon merolae genome project

Some changes in this site are listed in the Changes. 100% genome sequence is published (Jul 10 2007). After 3 years effort, we have achieved literally 100% completeness of C. merolae. Genome sequences. The detail is reported in the paper Nozaki, H. et al. 5, 28 (2007). PLEASE NOTE that the database is still based on old incomplete sequences* *. A comparative analysis is published (15 Feb 2005). A new paper from our project, Misumi, O. et al. Describes the genome wide comparison between C. merolae.

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Cyanidioschyzon merolae genome project | merolae.biol.s.u-tokyo.ac.jp Reviews

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Some changes in this site are listed in the Changes. 100% genome sequence is published (Jul 10 2007). After 3 years effort, we have achieved literally 100% completeness of C. merolae. Genome sequences. The detail is reported in the paper Nozaki, H. et al. 5, 28 (2007). PLEASE NOTE that the database is still based on old incomplete sequences* *. A comparative analysis is published (15 Feb 2005). A new paper from our project, Misumi, O. et al. Describes the genome wide comparison between C. merolae.

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1 cyanidioschyzon merolae

2 genome project

3 introduction

4 browser

5 blast

6 publications

7 download

8 member

9 news

10 changes

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cyanidioschyzon merolae,genome project,introduction,browser,blast,publications,download,member,news,changes,status,team,text query,case sensitive,page,bmc biology,plant physiology,the recent paper,c merolae,nature

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Cyanidioschyzon merolae genome project | merolae.biol.s.u-tokyo.ac.jp Reviews

https://merolae.biol.s.u-tokyo.ac.jp

Some changes in this site are listed in the Changes. 100% genome sequence is published (Jul 10 2007). After 3 years effort, we have achieved literally 100% completeness of C. merolae. Genome sequences. The detail is reported in the paper Nozaki, H. et al. 5, 28 (2007). PLEASE NOTE that the database is still based on old incomplete sequences* *. A comparative analysis is published (15 Feb 2005). A new paper from our project, Misumi, O. et al. Describes the genome wide comparison between C. merolae.

INTERNAL PAGES

merolae.biol.s.u-tokyo.ac.jp

1

Publications - Genome

http://merolae.biol.s.u-tokyo.ac.jp/publication/genome.html

Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae. Nature 2004 Apr 8;428:653-657. Small, compact genomes of ultrasmall unicellular algae provide information on the basic and essential genes that support the lives of photosynthetic eukaryotes, including higher plants. Here we report the 16,520,305-base-pair sequence of the 20 chromosomes of the unicellular red alga Cyanidioschyzon merolae. DNA Res. 2003 Apr 30;10(2):67-77. Are a basal clade within the red lineage plastids.

2

BLAST service for the genome project of Cyanidioschyzon merolae

http://merolae.biol.s.u-tokyo.ac.jp/blast/blast.html

Blastn (NT query - NT database). Blastp (AA query - AA database). Blastx (translated NT query - AA database). Tblastn (AA query - translated NT database). Tblastx (translated NT query - translated NT database). NCBI nr [May 1 2005] (AA database). NCBI nr C. merolae (AA database). NCBI COG (AA database). NCBI KOG (AA database). KEGG GENES (AA database). Annotated CDS (AA database). Translated ORF (AA database). Complete chromosomes (NT database). Older chromosomal fragments (NT database).

3

Chromosome Browser

http://merolae.biol.s.u-tokyo.ac.jp/db/chromosome.cgi

Reference: Matsuzaki, M. et al. 428, 653-657 (2004). Last modified: 2016-05-17 10:57:45 JST.

4

Changes in this site

http://merolae.biol.s.u-tokyo.ac.jp/root_changes.html

This is a list of some changes in this site. Note that minor changes may be omitted. BLAST system has been updated (8 Aug 2006). The BLAST programs have been replaced to the current version, 2.2.14. Member Login facility has been introduced (1 Mar 2006). Project members can obtain additional information when they are logged in. BLAST database has been updated (8 May 2005). Organellar genomes have been integrated (16 Nov 2004). BLAST system has been updated (9 Nov 2004). The interface has two new features.

5

Index of /download

http://merolae.biol.s.u-tokyo.ac.jp/download

BLAST service for the genome project of Cyanidioschyzon merolae. You can download FASTA sequence files below, or retrieve each sequence using this form:. DNA microarray data . Reference: Matsuzaki, M. et al. 428, 653-657 (2004). Last modified: 2016-05-17 10:57:45 JST.

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plant-pras.riken.jp

Plant-PrAS

http://plant-pras.riken.jp/menta.cgi/statistics/statistics

9658; 2. Tendency Graphs1. Polar%, Nonpolar%, Charged%, Acidic%, Basic%, GRAVY, pI, Transmembrane, S-S bonds, Domain linker. 9658; 3. Tendency Graphs2. Secondary structure, Solvent accessibility, Low complexity%, Disorder%, Ubiquitination, N-glycosylation, O-glycosylation, PDB. 1 Statistics of Records. Number of Records (All Data). Subcellular loc (TargetP) . Subcellular loc (WoLF) . Rosetta Stone Proteins (All Data). Average of Records (All Data). Beta; sheet%. Number of Records (Unannotated Data).

plant-pras.riken.jp

Plant-PrAS

http://plant-pras.riken.jp/menta.cgi/references/references

InterPro in 2011: new developments in the family and domain prediction database. 40, 306–312 (2012). DROP: an SVM domain linker predictor trained with optimal features selected by random forest. 27, 487–494 (2010). Plant-specific glycosylation patterns in the context of therapeutic protein production. 8, 564–587 (2010). Identification, Analysis and Prediction of Protein Ubiquitination Sites. 78, 365–380 (2010). Christophe N. Magnan. SOLpro: accurate sequence-based prediction of protein solubility. Automa...

plant-pras.riken.jp

Plant-PrAS

http://plant-pras.riken.jp/menta.cgi/index

Search Plant-PrAS data using multiple condition setting. Search Plant-PrAS data using keywords. Search Plant-PrAS data using general sequence IDs. You can see statistics of records and comparative graphs. You can use all Plant-PrAS for your research. You can use Plant-PrAS data with web API. We use many resources of protein sequences and bioinformatics tools. Plant-PrAS thanks all producers. We welcome you to visit our database sites. This work is licensed under a "Creative Commons Attribution". 20;16(8)...

mcc.nies.go.jp

トピックス | NIESコレクション

http://mcc.nies.go.jp/topics-j.html;jsessionid=18309342A23243264A2F6B727E9B1856

Cao, H. et al. 2014. Draft genome sequence of the toxic bloom-forming cyanobacterium Aphanizomenon ﬂos-aquae. NIES-81. GenomeA, 2, e00044-14. Fujisawa, T. et al. 2010. Genomic structure of an economically important cyanobacterium, Arthrospira. NIES-39. DNA Res., 17:85-103. Whole-genome ( NZ AP017305. Hirose, Y. et al. 2016. Complete genome sequence of cyanobacterium Fischerella. Sp strain NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46. PCC 6306 genomes. DNA Res. Rhee, ...

journal.frontiersin.org

Frontiers | Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots | Plant Traffic and Transport

http://journal.frontiersin.org/Journal/10.3389/fpls.2014.00615/abstract

You can login by using one of your existing accounts. Please fill in this field. Please fill in this field. Open-access plant science journal. Plant Traffic and Transport. Conflict of Interest Statement. NEW AWARD: Submit your Research Topic to qualify for $100,000 award. Read more on our blog. NEW AWARD: Submit your Research Topic to qualify for $100,000 award. Read more on our blog. Front Plant Sci., 12 November 2014 http:/ dx.doi.org/10.3389/fpls.2014.00615. James H. Leebens-Mack. Sucrose is among the...

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Cyanidioschyzon merolae genome project

Some changes in this site are listed in the Changes. 100% genome sequence is published (Jul 10 2007). After 3 years effort, we have achieved literally 100% completeness of C. merolae. Genome sequences. The detail is reported in the paper Nozaki, H. et al. 5, 28 (2007). PLEASE NOTE that the database is still based on old incomplete sequences* *. A comparative analysis is published (15 Feb 2005). A new paper from our project, Misumi, O. et al. Describes the genome wide comparison between C. merolae.

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