khanjankalyani.blogspot.com
Khanjan: June 2010
http://khanjankalyani.blogspot.com/2010_06_01_archive.html
Wednesday, June 23, 2010. Semi-automated ontology generation within OBO-Edit. Ontologies and taxonomies have proven highly beneficial for biocuration. The Open Biomedical Ontology (OBO) Foundry alone lists over 90 ontologies mainly built with OBO-Edit. Creating and maintaining such ontologies is a labour-intensive, difficult, manual process. Automating parts of it is of great importance for the further development of ontologies and for biocuration. Links to this post. Monday, June 21, 2010. Polygraph exa...
wiki.geneontology.org
Software and Utilities - GO Wiki
http://wiki.geneontology.org/index.php/Software_and_Utilities
The purpose of the Software and Utilities. Group to perform its function. In addition, the Annotation Outreach. Group and wider community need means of exploring and utilizing GO and existing annotations. This group complements all the other groups. Software and Utilities group summary. Timeline: SWUG Timeline 2010-2011. List of projects in progress: Category:SWUG Projects. Software Group 2010 Future Plans. GO database and go-perl. Reference Genome Software Prototype. For all new meetings. March 14 2007 -.
fb2014_03.flybase.org
FlyBase:Downloads Overview - FlyBase Wiki
http://www.fb2014_03.flybase.org/wiki/FlyBase:Downloads_Overview
General information about the available files. Types of files available. Precomputed data text files. Contents of the precomputed data text files listed by section. Postgres Chado database dump. Chado database (ftp:/ ftp.flybase.net/releases/FB*/psql). Current FTP repository (ftp:/ ftp.flybase.net/releases/FB*/). Current Chado-XML repository (ftp:/ ftp.flybase.net/releases/FB*/chado-xml). Current Reporting-XML repository (ftp:/ ftp.flybase.net/releases/FB*/reporting-xml). Allele data (Chado XML or Report...
planteome.org
Tools | Planteome
http://www.planteome.org/node/3
AISO (Annotation of Image Segments with Ontologies). AISO is a freely available, Java-based desktop application. It currently available on Linux, Mac OS X (64-bit), and Windows (32-bit). AISO is developed as part of the Plant Ontology. Project (NSF Award #0822201. The most recent version of AISO (including installation instructions). View mock annotations using the AISO. Community Annotation Wiki Prototype. Planteome by http:/ planteome.org. Based on a work at planteome.org. Latest Tweets from @Planteome.
ardb.cbcb.umd.edu
ARDB-Antibiotic Resistance Genes Database
http://ardb.cbcb.umd.edu/go.shtml
ARDB-Antibiotic Resistance Genes Database. Gene Ontology Terms for Antibiotic Resistance Genes. Here is a simple webpage ( Antibiotic Resistance GO Terms. Displaying all the newly created GO terms. The newly created antibiotic resistance GO terms can be downloaded here ( antibio resis.obo. And visualized by OBOEdit. Center for Bioinformatics and Computational Biology University of Maryland College Park, MD 20742.
wg.biosciencedbc.jp
start [実務者連絡会]
https://wg.biosciencedbc.jp/doku.php/start
Q and A 編集中. 2016年 8月29日(月) 10:00 30日(火) 18:00 SPARQLthon47. 省間連携 AIST, NIAS, NIBIOHN. ここで紹介する研究開発について、 詳細な説明を聞きたい 、 ディスカッションをしたい 、また 論文など資料がほしい などのご要望があれば、NBDCまでご相談ください。 SRAs Survey of Read Archives. Kusarinoko Search SRA Entries with PubMed Article. Purlは、Persistent Uniform Resource Identifier のことで、永続性を持ったURIという意味です。 現在の収録件数は、約310万件 2012.11現在 です。 なお、双方向リンク 各機関 日化辞 は、別の仕組みを使って実現することを検討しています。 JSTの日本化学物質辞書 日化辞 のRDFデータがCC BYで公開される見込み. Q and A 編集中. A OBO The Open Biological and Biomedical Ontologies.
sdcsb.ucsd.edu
Resources | San Diego Center for Systems Biology
http://sdcsb.ucsd.edu/resources-2
Cell-Cell Communication and Heterogeneity. Genomics and Genome Engineering. Microfluidics and Synthetic Biology. Network Assembly and Mathematical Modeling. Education & Outreach. Systems Biology Trainee Program. The San Diego Center for Systems Biology. SDCSB Annual Scientific Retreat. January 20-22, 2017. UCLA Lake Arrowhead Conference Center. Register for the event here. February 21-24, 2017. Grand Hyatt Kauai Resort and Spa. Register for the event here. March 20-24, 2017. Organized by Kamala Janiyani.
echickatlas.org
Hamburger Hamilton Stages
http://www.echickatlas.org/ecap/hamburger_hamilton_stages/hamburger_hamilton_stages.html
CGNC (The Chicken Gene Nomenclature Consortium). Links to Chick Meetings. Chick User Group Links. What is the ECAP? Wholemount Images At Stages. Wholemount Images at Stages. NOT Staged/Timed) with all pathways to child nodes materialised, in Plain Text only, as a Tree Report. NOT Staged/Timed) in OBO Flat File Format, version 1.2. Available for viewing/editing using OBO-Edit. Eyal-Giladi and Kochav Stages. Hamburger and Hamilton Stages. ECAP • Human Genetics Unit • Medical Research Council.
fb2012_06.flybase.org
FlyBase:Downloads Overview - FlyBase Wiki
http://www.fb2012_06.flybase.org/wiki/FlyBase:Downloads_Overview
General information about the available files. Types of files available. Precomputed data text files. Contents of the precomputed data text files listed by section. Postgres Chado database dump. Chado database (ftp:/ ftp.flybase.net/releases/FB*/psql). Current FTP repository (ftp:/ ftp.flybase.net/releases/FB*/). Current Chado-XML repository (ftp:/ ftp.flybase.net/releases/FB*/chado-xml). Current Reporting-XML repository (ftp:/ ftp.flybase.net/releases/FB*/reporting-xml). Allele data (Chado XML or Report...
