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ProtChemSI: protein-chemical interaction database

The database of protein-chemical structural interactions. The current version includes data from the Protein Data Bank. As of August 2011. The database is updated monthly. Search for your favorite protein or chemical. Enter protein name or UniProt ID. OR search by FASTA sequence. Enter small molecule name or PubChem ID. OR search by SMILES string. With the Tanimoto score greater than (from 0 to 1). When referencing, please cite:. Design based on a template by CSS Templates.

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ProtChemSI: protein-chemical interaction database | pcidb.russelllab.org Reviews
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The database of protein-chemical structural interactions. The current version includes data from the Protein Data Bank. As of August 2011. The database is updated monthly. Search for your favorite protein or chemical. Enter protein name or UniProt ID. OR search by FASTA sequence. Enter small molecule name or PubChem ID. OR search by SMILES string. With the Tanimoto score greater than (from 0 to 1). When referencing, please cite:. Design based on a template by CSS Templates.
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ProtChemSI: protein-chemical interaction database | pcidb.russelllab.org Reviews

https://pcidb.russelllab.org

The database of protein-chemical structural interactions. The current version includes data from the Protein Data Bank. As of August 2011. The database is updated monthly. Search for your favorite protein or chemical. Enter protein name or UniProt ID. OR search by FASTA sequence. Enter small molecule name or PubChem ID. OR search by SMILES string. With the Tanimoto score greater than (from 0 to 1). When referencing, please cite:. Design based on a template by CSS Templates.

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pcidb.russelllab.org pcidb.russelllab.org
1

ProtChemSI: protein-chemical interaction database

http://pcidb.russelllab.org/docs.shtml

The database of protein-chemical structural interactions. ProtChemSI is based on two major notions: Molecules and Links. 21 Molecules are proteins and chemicals. 211 Proteins are identified by their UniProt. IDs For each protein, the following information is stored, extracted from UniProt. Each protein is linked out to UniProt. 212 Chemicals are identified by their PubChem {} IDs. For each chemical, the following information is stored, extracted from PubChem. List of name synonyms. Search for the other p...

2

ProtChemSI: protein-chemical interaction database

http://pcidb.russelllab.org/downloads.shtml

The database of protein-chemical structural interactions. Proteins.txt.tar.gz. Chemicals.txt.tar.gz. Transformations.txt.tar.gz. Last updated: August 2011. When referencing, please cite:. Kalinina OV, Wichmann O, Apic G, Russell RB (2011). Combinations of protein-chemical complex structures reveal new targets for established drugs. PLoS Comp Biol. Design based on a template by CSS Templates.

3

ProtChemSI: protein-chemical interaction database

http://pcidb.russelllab.org/about.html

The database of protein-chemical structural interactions. ProtChemSI, the database of Prot. ProtChemSI was developed by Olga Kalinina and Rob Russell at the Protein Evolution group, CellNetworks, University of Heidelberg. When referencing, please cite:. Kalinina OV, Wichmann O, Apic G, Russell RB (2011). Combinations of protein-chemical complex structures reveal new targets for established drugs. PLoS Comp Biol. The database will be updated monthly. The current data is of August 2011.

4

ProtChemSI: protein-chemical interaction database

http://pcidb.russelllab.org/help.html

The database of protein-chemical structural interactions. ProtChemSI, The database of protein-chemical structural interactions includes all existing 3D structures of complexes of proteins with low molecular weight ligands from the Protein Data Bank. Ligands are defined as something present in the PubChem. Database. Since a protein or a chemical may present in multiple complexes with different interaction partners, ProtChemSI is essentially a network of interactions. Since protein and chemical annotations...

5

ProtChemSI: protein-chemical interaction database

http://pcidb.russelllab.org/examples.html

The database of protein-chemical structural interactions. Using 1-step superimposition, we predict structures of several established relationships that lack an experimental structure. For example, we predicted complexes between DNA topoisomerase 2 and radicicol [1]. The complex of human topoisomerase 2α with its inhibitor radicicol, predicted via complexes of topoisomerase 2α with adenosine (PDB code 1ZXN), yeast chaperone HSP82 with adenosine (PDB code 1AMW) and radicicol (PDB code 1BGQ). We predict a c...

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russelllab.org russelllab.org

Services offered by Protein Evolution

http://www.russelllab.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

landscape.syscilia.org landscape.syscilia.org

Services offered by Protein Evolution

http://www.landscape.syscilia.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

mechismo.russelllab.org mechismo.russelllab.org

Services offered by Protein Evolution

http://www.mechismo.russelllab.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

3drepertoire.russelllab.org 3drepertoire.russelllab.org

Services offered by Protein Evolution

http://www.3drepertoire.russelllab.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

dilimot.russelllab.org dilimot.russelllab.org

Services offered by Protein Evolution

http://www.dilimot.russelllab.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

proust2.russelllab.org proust2.russelllab.org

Services offered by Protein Evolution

http://www.proust2.russelllab.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

hub.russelllab.org hub.russelllab.org

Services offered by Protein Evolution

http://www.hub.russelllab.org/services.shtml

This tool lets you interrogate data from our collaborative project on the Ciliary proteome, where we identified nearly 5000 interactions and over 50 complexes, involving more than 1000 proteins in the cilia. From Boldt, van Reeuwijk, Lu, Koutroumpas et al Nat Commun. From Betts et al, Nucl Acids Res. A database of protein-chemical interactions predicted by structure superimpositions: if you are interested in chemicals that might bind a particular protein or vice versa, then check it out. From Stark et al...

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ProtChemSI: protein-chemical interaction database

The database of protein-chemical structural interactions. The current version includes data from the Protein Data Bank. As of August 2011. The database is updated monthly. Search for your favorite protein or chemical. Enter protein name or UniProt ID. OR search by FASTA sequence. Enter small molecule name or PubChem ID. OR search by SMILES string. With the Tanimoto score greater than (from 0 to 1). When referencing, please cite:. Design based on a template by CSS Templates.

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