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PHENOSCAPE homePublications, posters, presentations. Phenoscape KB technical overview.
http://www.phenoscape.org/
Publications, posters, presentations. Phenoscape KB technical overview.
http://www.phenoscape.org/
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PHENOSCAPE home | phenoscape.org Reviews
https://phenoscape.org
Publications, posters, presentations. Phenoscape KB technical overview.
Phenoscape Knowledgebase
Find an item by name. 0" cg-busy="anatomyResults.$promise" class="search-accordion-group". 0" cg-busy="taxaResults.$promise" style="box-shadow: 10px 10px 5px #888888;". 0" cg-busy="geneResults.$promise" style="box-shadow: 10px 10px 5px #888888;". Genelabel} ({ gene.taxon.label} ). The Phenoscape project is funded by NSF collaborative grants DBI-1661529. And in the past supported by DBI-1062404. And the National Evolutionary Synthesis Center (NESCent), NSF EF-0905606.
Phenoscape | Ontology-enabled reasoning across phenotypes from evolution and model organisms
Ontology-enabled reasoning across phenotypes from evolution and model organisms. Tree of life and data integration challenges at the first FuturePhy workshop. April 6, 2016. What are the challenges in building, visualizing and using the Tree of Life? How can we best utilize and build on existing phylogenetic knowledge and look ahead to address the challenges of data integration? Recently, fellow Phenoscaper Jim Balhoff and I attended the first FuturePhy. Read the rest of this entry ». January 13, 2016.
Phenoscape Knowledgebase
The Knowledgebase currently contains 565,158. Phenotype statements about 2,527. Taxa, sourced from 57. As well as 38,189. Phenotype statements about 4,727. Genes, retrieved from ZFIN. The data were last loaded into the Knowledgebase on 2013-01-26. The Phenoscape Knowledgebase is currently in beta testing. We would greatly value your feedback. As we continue its development. You can use the tools below to explore the Knowledgebase in different ways. Click the help. Icons below to learn more about each tool.
phenoscape.org
Category:Reasoning - phenoscape
http://www.phenoscape.org/wiki/Category:Reasoning
Index of pages labeled with category OBD Reasoner. Pages in category "Reasoning". The following 15 pages are in this category, out of 15 total. Absence Phenotypes in OWL. Entities with taxonomic context. KB data integrity checks. Logic and Reasoning Challenges. Modeling Absence of Phenotypes. OWL modeling of EQ phenotypes. Reasoning over homology statements. Relating taxa to phenotypes. Semantics of phenotype annotations. Retrieved from " https:/ wiki.phenoscape.org/wg/phenoscape/index.php?
Author Guide - phenoscape
http://www.phenoscape.org/wiki/Author_Guide
This page provides background information for authors whose publication(s) has been curated for the Phenoscape Knowledgebase. The goal of the Phenoscape Project is to link evolutionary data to genomics using ontologies and Phenoscape is developing a curated knowledgebase of morphological characters and prototyping the approach with ostariophysan fishes, beginning with the papers that have published data matrices. Learn more about the project and the ontologies used by Phenoscape here. E: supraorbital, Q:...
Resources for Data Contributors - phenoscape
http://www.phenoscape.org/wiki/Resources_for_curators
Resources for Data Contributors. Redirected from Resources for curators. The following instructions outline the resources used by Phenoscape curators for the annotation of evolutionary phenotypes. If you are a student intern, please refer to the Student Instructions. Page for more information and links. Data uploaded to the Phenoscape Knowledgebase are made available under a Creative Commons Attribution 3.0 Unported license (see Phenoscape data policy. 1 Download Most Recent Version of Phenex. Phenoscape...
Phenex - phenoscape
http://www.phenoscape.org/wiki/Phenex
Source code and support. Reporting Bugs and Feature Requests. Creating a term filter. Locating the Phenex settings folder. Creating, opening, and saving data files. Entering polymorphic or uncertain state values. Collaboration via file change detection and autosave. Ontology Request Broker (ORB). Removing Corrupted Ontology Files. Format standard for evolutionary data. Phenex builds on Phenote. From the OBO project. Jim Balhoff is the lead developer of Phenex. See the Phenex release history. Balhoff JP, ...
Software - phenoscape
http://www.phenoscape.org/wiki/Software
This page provides a overview of our software development activities. Phenoscape supports open development processes and collaboration. All source code we create is available from open source repositories such as Github. And we work with existing open-source projects whenever possible. Repositories no longer being used/maintained. The live KB can be accessed at http:/ kb.phenoscape.org/. For more information on the Phenoscape Knowledgebase see these wiki pages:. Written in Scala using OWL API and Jena.
TOTAL PAGES IN THIS WEBSITE
16
Scientific peer-review as web-annotations: an experiment - Lappland. Inside Out.
http://lappland.io/blog/2014/03/open-peer-review-as-annotations
Lappland. Inside Out. Scientific peer-review as web-annotations: an experiment. Mon 24 March 2014. Recently I was invited by the journal F1000 Research. To review an article about Software Carpentry. Platform. What follows is an account of what motivated me to experiment with this, and what resulted from it. One step in fixing peer-review: open reviews. Are strictly open and associated with the reviewer's identity. Why the peer-review process is still loathsome. Perhaps most importantly, a reader of the.
Small Change Bioinformatics | Page 2
https://smallchangebio.wordpress.com/page/2
July 11, 2014. Notes: Bioinformatics Open Source Conference 2014 day 2: Philip Bourne, Software Interoperability, Open Science. I’m at the 2014 Bioinformatics Open Source Conference (BOSC). In Boston. It’s a great two day conference devoted to open source, science and community. These are my notes from the day 2 morning session. Next Day Video. Recorded all the talks and they’re available on the Open Bio video site. Biomedical Research as an Open Digital Enterprise. Mentions the current issue that softwa...
10 Years of NESCent
http://www.nescent.org/news/10YearsofNESCent.php.html
Science of Science Project. Google Summer of Code Program. NESCent Evolution Film Festival. 10 Years of NESCent. 10 Years of NESCent. This November marked the ten-year anniversary for NESCent. To celebrate, past and present members of the advisory board, potential partners for continuing programs, and the NESCent community gathered at the Washington Duke Inn for a weekend of scientific symposia, poster sessions, and reunions. And read more testimonials in the Fall 2014 issue. Of the @NESCent Newsletter.
A Creative Commons license chooser macro for Pelican blogs - Lappland. Inside Out.
http://lappland.io/blog/2014/01/macro-for-creative-commons-licence-mark
Lappland. Inside Out. A Creative Commons license chooser macro for Pelican blogs. Sun 12 January 2014. And the one I am using. Theme I am using - it is under active development, including in fact by myself. A Creative Commons license chooser as a macro. So I decided to address this in a way that would be reusable by the Pelican. Community. I'm a big fan of Creative Commons. And their legal work to make the world's online content better shareable, and so I wrote a Jinja2 macro. How does it work? As an exa...
hardware - Lappland. Inside Out.
http://lappland.io/blog/tag/hardware
Lappland. Inside Out. Computer failure without the agony - wishful thinking? Yesterday my laptop (a Macbook Pro) died. It showed the first signs of severe illness 2 days earlier, seemed to recover at first after a lot of agony, but then deteriorated rapidly yesterday morning. This post isn't about a story of data loss, even if that is sadly still . Feb 08, 2014. 2014 Hilmar Lapp · Powered by pelican-bootstrap3. Content licensed under a Creative Commons Attribution 4.0 International License.
The Ontological Ethologist: March 2010
http://ontethology.blogspot.com/2010_03_01_archive.html
Ontologies, comparative methods, and analysis of behavior. Saturday, March 27, 2010. Coming this summer plus Phenoscape in Chicago last week. I've registered for the Evolution and iEvoBio. Chris Mungall gave two interesting presentations on reasoning with homologies at a Phenoscape. I didn't submit a proposal for a phyloinformatics. Summer of code project this year; I'll help out if it's appropriate for someone else's project, but I didn't have any brainstorms this year. None the less, if you're a st...
NESCent: About the Center
http://www.nescent.org/about
Science of Science Project. Google Summer of Code Program. NESCent Evolution Film Festival. NESCent has transitioned to the Triangle Center for Evolutionary Medicine, TriCEM. This website remains up to communicate information about NESCent and its programs. It is not being maintained, and information here may be obsolete. Synthetic research in evolutionary science takes many forms but includes integrating novel data sets and models to address important problems within a discipline, developing new analyti...
NESCent: News
http://www.nescent.org/news/index.html
Science of Science Project. Google Summer of Code Program. NESCent Evolution Film Festival. Press releases highlighting research and events at the Center are posted to EurekAlert! And various other outlets, depending on the topic. Learn about funding opportunities, science highlights, and upcoming events in our quarterly e-newsletter. Subscribe. To receive future issues via e-mail, or visit the archive. 10 Years of NESCent. Page of Science and Synthesis. Information about the training opportunities offer...
TOTAL LINKS TO THIS WEBSITE
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phenos's blog - Phenosgame - Skyrock.com
C'est un blog pour ceux qui ne l'auraient pas compris sur les jeux vidéos, qui est souvent mis à jour, des tests seronts mis, des coups de coeur, des liens, des news. 10/04/2008 at 4:10 AM. 18/10/2008 at 4:12 PM. Subscribe to my blog! Raisons de mon absence et de mes futures absences. Je ne suis que très peu présent sur mon blog et je m'en excuse. Ces derniers temps, je me suis lancé dans la création et la gestion de sites communautaires:. Please enter the sequence of characters in the field below. Dark ...
Checkdomain Parking - www.phenoscale.asia
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phenoscanner.medschl.cam.ac.uk
PhenoScanner Home Page
A database of human genotype-phenotype associations. For an example, try rs1030171. Upload a file, one rsID or hg19 chrN:pos per line (max 50):.
PHENOSCAPE home
Publications, posters, presentations. Phenoscape KB technical overview.
PHENOSCAPE.NET
PHENOSCAPE home
Publications, posters, presentations. Phenoscape KB technical overview.
www.phenoscience-laboratories.org
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Phenoscience Laboratories (PSL) | Bridging scientific theory
Jan Walleczek (Phenoscience Laboratories, Berlin) is a guest editor of a Special Issue. Together with Gerhard Grössing (AINS, Vienna), Paavo Pylkkänen (University of Helsinki, Helsinki), and Basil Hiley (University College, London). The title of the Special Issue is. Emergent Quantum Mechanics – David Bohm Centennial Perspectives. The collection of special-issue contributions will also be published as a printed book. In summer 2018. The deadline for submission is April 30, 2018. October 26-28, 2017.
www.phenoscience.info
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