phenoscape.org
phenoscape
http://phenoscape.org/wiki/Main_Page
We are posting vertebrate skeletal images from the Junior Biocurator Program to our Phenoscape flickr account. Note our workshop [1]. At California Academy of Sciences. Thanks to the National Science Foundation. And DeepFin Research Coordination Network. For the funding that made this possible. Try the Phenoscape Knowledgebase. Your feedback is welcome! Check out the latest news on the Phenoscape blog. Ontology-enabled reasoning across phenotypes from evolution and model organisms. Our overall objective ...
cartiksplace.blogspot.com
The Semantic Web in Life Sciences research: Modeling the Linnaean taxonomy in OWL
http://cartiksplace.blogspot.com/2010/02/modeling-linnaean-taxonomy-in-owl.html
Friday, February 26, 2010. Modeling the Linnaean taxonomy in OWL. Following up on the Phenoscape. Beta release in July, I've worked primarily on warehousing the phenotype data and refactoring the data services for faster performance on the Phenoscape web interface. I'm also collaborating with Chris Mungall. To relate these two entities, we have defined a new binary relation exhibits. Relation has been defined in an OBO framework, where only a simple ID and label are required with a text description of th...
biodiversityinformatics.org
Aggregated species trait data | GBIO
http://www.biodiversityinformatics.org/aggregated-species-trait-data
Aggregated species trait data. Providing the framework to capture all available trait information for any species, and interactions between species. Progress: limited (limited existing standardization; needs further development). PROJECTS WHICH CONTRIBUTE TO THIS COMPONENT. The community has already developed some major data repositories. For traits these include: TraitNet. Species traits in the Encyclopedia of Life. IWDB), Semantic Web Informatics for Species in Space and Time. SDD), the Plinian Core.
phenoscape.org
Software - phenoscape
http://phenoscape.org/wiki/Software
This page provides a overview of our software development activities. Phenoscape supports open development processes and collaboration. All source code we create is available from open source repositories such as Github. And we work with existing open-source projects whenever possible. Repositories no longer being used/maintained. The live KB can be accessed at http:/ kb.phenoscape.org/. For more information on the Phenoscape Knowledgebase see these wiki pages:. Written in Scala using OWL API and Jena.
cartiksplace.blogspot.com
The Semantic Web in Life Sciences research: November 2009
http://cartiksplace.blogspot.com/2009_11_01_archive.html
Saturday, November 14, 2009. Biological data integration with Phenoscape. It has been quite a long time since my last post in June 2008. I have since taken up a position working on an NSF funded project in Durham, NC. Phenoscape. Developed by my colleague, Jim Balhoff. By ontology based semantics, I mean semantics defined in OBO. The schema of the Phenoscape knowledgebase is based upon the Ontology-Based Database. OBD) schema developed by Chris Mungall. At the Lawrence Berkeley National Laboratory for st...
cartiksplace.blogspot.com
The Semantic Web in Life Sciences research: February 2010
http://cartiksplace.blogspot.com/2010_02_01_archive.html
Friday, February 26, 2010. Modeling the Linnaean taxonomy in OWL. Following up on the Phenoscape. Beta release in July, I've worked primarily on warehousing the phenotype data and refactoring the data services for faster performance on the Phenoscape web interface. I'm also collaborating with Chris Mungall. To relate these two entities, we have defined a new binary relation exhibits. Relation has been defined in an OBO framework, where only a simple ID and label are required with a text description of th...
