rbvi.ucsf.edu
RBVI Home PageUniversity of California, San Francisco.
http://rbvi.ucsf.edu/
University of California, San Francisco.
http://rbvi.ucsf.edu/
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RBVI Home Page | rbvi.ucsf.edu Reviews
https://rbvi.ucsf.edu
University of California, San Francisco.
Structure Function Linkage Database
See description in Nucleic Acids Res. 2014 Jan 1; 42. What is the Structure-Function Linkage Database (SFLD)? A hierarchical classification of enzymes that relates specific sequence-structure features to specific chemical capabilities. A collection of tools and data for investigating sequence-structure-function relationships and hypothesizing function. How can I use the SFLD? Using Hidden Markov Models. Browse superfamilies in the SFLD. Search for a specific enzyme. View structures in Chimera.
rbvi.ucsf.edu
RBVI Overview
http://rbvi.ucsf.edu/Overview/index.html
We distribute software tools. Including the popular UCSF Chimera. Visualization and analysis package, host the Structure-Function Linkage Database. And provide access to state-of-the-art computational resources. In support of research projects in these areas. Our Center's history dates back to the earliest application of molecular graphics. The RBVI is organized around five key activities:. Core research and development. Development and access to visualization resources.
Available Resources at the RBVI
http://rbvi.ucsf.edu/Resources/index.html
A major focus of the RBVI is the development of interactive. Computer graphics techniques. The powerful and affordable graphics processing units now available for desktop computers enable these methods to be accessed by any scientist. The RBVI develops and provides a number of software tools. Most notably the UCSF Chimera. Package (or simply, "Chimera") for molecular visualization and analysis, and several Cytoscape plugins. The RBVI develops and hosts the Structure-Function Linkage Database. Advanced ba...
RBVI's Outreach and Training Activities
http://rbvi.ucsf.edu/Outreach/index.html
Software we distribute, most of which is free and includes source code. Workshops and training offered by the RBVI on the tools we have developed. Brief reports on technologies the RBVI uses or has has evaluated. Selected list of published papers describing the technology we have developed. Presentations of our work at conferences and symposiums. RBVI Holiday Card Gallery. Many years of holiday cards made with our visualization software. Bioinformatics Tools from Genentech.
Information for RBVI Visitors
http://rbvi.ucsf.edu/Visitors/index.html
Information for RBVI Visitors. Resource for Biocomputing, Visualization, and Informatics. 600 16th Street, M/S 2240. San Francisco, CA 94158-2517. Normally Monday through Friday: 9:00 am - 5:00 pm (Pacific Time Zone). How to get to the Resource for Biocomputing, Visualization, and Informatics. Maps and directions are available from several sources: Google. Here's a link to current traffic conditions: Bay Area Traffic. If you are using public transportation, 511 Transit. Once you're on campus. The Nationa...
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Mesoscope @ UCSF
http://ucsf.grahamjlab.org/home
SciViz Careers and Tools. VIZBI 2013 uPy/ePMV/autoPACK Workshop. Johns Hopkins Workshop 2013. AMI ePMV workshop 2013. Behold HIV-1 0.1.6. Best Blender Animation Ever (uses ePMV too! HHMI illustration brought back to life. Immune Defense kickstarter 16 days. Johnson wins 2nd place Biophysical Society Annual Meeting 2014 Image Contest. Lecture at Faraday Discussion 169 in May, 2014. Lecture: Sampson Feldman Visiting Scholar. Megan Riel-Mehan featured in USCF Science in Focus article. AMI ePMV workshop 2013.
Collaborations - Mesoscope @ UCSF
http://www.grahamjlab.org/collaborations
SciViz Careers and Tools. VIZBI 2013 uPy/ePMV/autoPACK Workshop. Johns Hopkins Workshop 2013. AMI ePMV workshop 2013. Behold HIV-1 0.1.6. Best Blender Animation Ever (uses ePMV too! HHMI illustration brought back to life. Immune Defense kickstarter 16 days. Johnson wins 2nd place Biophysical Society Annual Meeting 2014 Image Contest. Lecture at Faraday Discussion 169 in May, 2014. Lecture: Sampson Feldman Visiting Scholar. Ritisha Laungani receives Allan Kuchinsky Student Award. SciViz Careers and Tools.
Mesoscope @ UCSF
http://www.grahamjlab.org/home
SciViz Careers and Tools. VIZBI 2013 uPy/ePMV/autoPACK Workshop. Johns Hopkins Workshop 2013. AMI ePMV workshop 2013. Behold HIV-1 0.1.6. Best Blender Animation Ever (uses ePMV too! HHMI illustration brought back to life. Immune Defense kickstarter 16 days. Johnson wins 2nd place Biophysical Society Annual Meeting 2014 Image Contest. Lecture at Faraday Discussion 169 in May, 2014. Lecture: Sampson Feldman Visiting Scholar. Ritisha Laungani receives Allan Kuchinsky Student Award. SciViz Careers and Tools.
SACS Site Highlights
http://sacs.ucsf.edu/site.html
Admin and aux services. Admin and aux services. Admin and Aux Services. Web or Wiki hosting. The mission of the Sequence Analysis and Consulting Service. SACS provides its services primarily on a recharge basis to UCSF researchers. Collaborations may also be possible. SACS has three web interfaces that allow a user to explore a gene's local genomic environment. The gene envirnoments across 6 different species can be explored by using envs. The image at the left is from a envs. Run using the term abcb7.
SACS Home page
http://sacs.ucsf.edu/index.html
Admin and aux services. Admin and aux services. August 30, 2016. Due to a change in the way NCBI names the download files on their server, the refseq and trembl databases are 2 weeks out of date. We are working on fixing this and will have new scripts in place by the end of September. Admin and Aux Services. Web or Wiki hosting. The mission of the Sequence Analysis and Consulting Service. SACS provides its services primarily on a recharge basis to UCSF researchers. Collaborations may also be possible.
SFLD - Projects under Development
http://sfld.rbvi.ucsf.edu/django/web/development
SFLD Projects under Development. To address the limits of manual curation in achieving broader coverage of the superfamily universe and to keep pace with the increasing amount of data from genomic and community sequencing projects, we have instituted the Extended SFLD (XSFLD). This effort is aimed at structure-function mapping via automated creation of sequence similarity networks. For a large proportion of the known enzyme superfamilies, regardless of whether they are functionally diverse. 2009), we hav...
SFLD - Caveats
http://sfld.rbvi.ucsf.edu/django/web/caveats
Due to the intense level of curation, the Core SFLD currently contains a limited set of superfamilies; however, superfamilies will be added and updated as analyses are performed; see also the Extended SFLD (XSFLD). The Core SFLD (as opposed to the XSFLD). Is primarily concerned with mechanistically diverse superfamilies. Not superfamilies whose members all catalyze essentially the same chemical transformation ( e.g. Sequence and structure content. Level (not to the family. HMMs are not built for families.
Plans | Department of Pharmaceutical Chemistry | UCSF
http://pharmchem.ucsf.edu/about/plans
University of California, San Francisco. University of California, San Francisco. Department of Pharmaceutical Chemistry. Chemical Biology and Medicinal Chemistry. Computational Chemistry and Biology. Protein and Cellular Engineering. The department aims to accomplish its goals through recruitment, collaboration, and funding, and through the continued development of research technologies in six major department-run enabling technology centers:. Nuclear Magnetic Resonance Laboratory. Use protein design to...
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Red Bank Veterinary Hospital Cincinnati Home Page
Red Bank Veterinary Hospital. Red Bank Veterinary Hospital is a full service veterinary facility that strives to provide the finest professional health care in the Fairfax, Mariemont, Hyde Park, Madisonville, Indian Hill, Oakley and Terrace Park areas of Cincinnati under the care of Dr. Jim Ryan since 2000. At Red Bank Veterinary Hospital we are dedicated to excellence through ongoing education, personal growth and team work. Thanks for visiting and we look forward to meeting you! PUPPY AND KITTEN PLANS.
Veterinary Hospital | Red Bank Veterinary Hospital
24-Hour Emergency and Critical Care. 5 Locations Throughout NJ. RBVH Cherry Hill Moving Fall 2015. Anesthesiology and Pain Management. Dentistry and Oral Surgery. Interventional Radiology and Endoscopy (Minimally Invasive Procedures). Center for Integrative Medicine. If Your Pet Is Hospitalized. Join Our Veterinary Team. Technician Student Specialty Externship. Undergraduate Student Extern (Pre-Vet) Externship. Contact Info and Maps. Join Our Health Care Team. Save US Pets Foundation. If Your Pet is.
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The domain name RBVI.COM.
The domain name RBVI.COM is for sale. Get On The Web Limited some years ago registered for its websites, portals and client projects a number of generic domain names (including this one), which are now no longer required. We are offering for sale the domain name RBVI.COM. If you are interested in the 4-letter acronym RBVI and would like to purchase the domain name RBVI.COM please complete this offer form. Why choose a 4-letter acronym like RBVI for your business?
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