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rna.lundberg.gu.se

Sequence bioinformatics

Sequence bioinformatics - research and educational resources at bio.biomedicine.gu.se. Sequence bioinformatics - educational material. Multiple sequence alignment / NJ -tree. Worked example of neighbor joining tree construction. Simple interface to UPGMA. Genomics and bionformatics course 2013. Book: Genomics and Bioinformatics - An Introduction to Programming Tools for Life Scientists. Sequence bioinformatics - databases and research tools. EGOB Eukaryotic Gene Order Browser. Prediction of SRP RNA genes.

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Sequence bioinformatics | rna.lundberg.gu.se Reviews
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Sequence bioinformatics - research and educational resources at bio.biomedicine.gu.se. Sequence bioinformatics - educational material. Multiple sequence alignment / NJ -tree. Worked example of neighbor joining tree construction. Simple interface to UPGMA. Genomics and bionformatics course 2013. Book: Genomics and Bioinformatics - An Introduction to Programming Tools for Life Scientists. Sequence bioinformatics - databases and research tools. EGOB Eukaryotic Gene Order Browser. Prediction of SRP RNA genes.
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1 institute of biomedicine
2 translation utility
3 wise2 alignment
4 webcutter
5 emboss explorer
6 molecular biology quiz
7 cambridge university press
8 web resources
9 srpdb
10 srpscan
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Sequence bioinformatics | rna.lundberg.gu.se Reviews

https://rna.lundberg.gu.se

Sequence bioinformatics - research and educational resources at bio.biomedicine.gu.se. Sequence bioinformatics - educational material. Multiple sequence alignment / NJ -tree. Worked example of neighbor joining tree construction. Simple interface to UPGMA. Genomics and bionformatics course 2013. Book: Genomics and Bioinformatics - An Introduction to Programming Tools for Life Scientists. Sequence bioinformatics - databases and research tools. EGOB Eukaryotic Gene Order Browser. Prediction of SRP RNA genes.

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rna.lundberg.gu.se rna.lundberg.gu.se
1

SRP RNA prediction server

http://rna.lundberg.gu.se/srpscan

SRPscan - Prediction of SRP RNA genes in genomic DNA sequences. This prediction is based on methods described in our paper Regalia et al (2002) Nucl. Acid Res. Supplement to the paper is found here. The prediction method makes use of rnabob. In this web server also MFOLD. Is used to predict the secondary structure - this function is currently disabled, May-08. 1 First step: Preliminary scan. Select organism / RNA structure subtype:. Eukaryotes (NOT yeast NOT plants).

2

SRPDB Welcome

http://rna.lundberg.gu.se/dbs/SRPDB/SRPDB.html

SRPDB (Signal Recognition Particle Database) provides aligned, annotated and phylogenetically ordered sequences related to structure and function of SRP. Key Publication in 1972. Nobel Prize in 1999. Bacteria with small (4.5S) SRP RNAs listed phylogenetically. Bacteria with large (6S) SRP RNAs listed phylogenetically. Archaea SRP RNAs listed phylogenetically. Protozoa group SRP RNAs listed phylogenetically. Fungi (Ascomycota) SRP RNAs listed phylogenetically. Metazoa group SRP RNAs listed phylogenetically.

3

Webcutter 2.0

http://rna.lundberg.gu.se/cutter2

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Sequence bioinformatics - research and educational resources at bio.biomedicine.gu.se. Sequence bioinformatics - educational material. Multiple sequence alignment / NJ -tree. Worked example of neighbor joining tree construction. Simple interface to UPGMA. Genomics and bionformatics course 2013. Book: Genomics and Bioinformatics - An Introduction to Programming Tools for Life Scientists. Sequence bioinformatics - databases and research tools. EGOB Eukaryotic Gene Order Browser. Prediction of SRP RNA genes.

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