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rna.it-chiba.ac.jp

Server for Structural Biology

Server for Structural Biology, Chiba Institute of Technology

http://rna.it-chiba.ac.jp/

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Server for Structural Biology | rna.it-chiba.ac.jp Reviews
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Server for Structural Biology, Chiba Institute of Technology
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vsfold4 server,secondary structure only,vsfold5 server,vs subopt server,references,vswindow and genopoemics,csna,relp,questions and commnets
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Server for Structural Biology | rna.it-chiba.ac.jp Reviews

https://rna.it-chiba.ac.jp

Server for Structural Biology, Chiba Institute of Technology

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1

CSNA - Classification System for Nucleic Acid structure determination ver. 1.060117

http://www.rna.it-chiba.ac.jp/csna_trial

CSNA version 1.0. Archive (*.tar.gz or *.zip):. Loose grouping threshold (real):.

2

vs_subopt: RNA pseudoknot prediction server

http://www.rna.it-chiba.ac.jp/~vsfold/vs_subopt

Where the folding landscape is always funnel shaped. The High Technology Research Center. Chiba Institute of Technology. And thank you for your interest in this RNA secondary structure prediction server. The current folding program is version 5.39. Please feel free to contact the. If you have any specific questions. Current version of vs subopt pseudoknot prediction program is now 5.39. Only sequences less than 400 nt. Default values are changed only if you mark them. Please read the [? 10 nt (& greater).

3

vsfold5: RNA pseudoknot prediction server

http://www.rna.it-chiba.ac.jp/~vsfold/vsfold5

Where the folding landscape is always funnel shaped. The High Technology Research Center. Chiba Institute of Technology. And thank you for your interest in this RNA secondary structure prediction server. The current folding program is version 5.23. Please feel free to contact the. If you have any specific questions. May 27, 2015: The subopt version ( vs subopt. Sept 25, 2007: some bugs were fixed. Only sequences less than 450 nt. Default values are changed only if you mark them. Please read the [?

4

vswindow and GenoPoemics

http://www.rna.it-chiba.ac.jp/~vswindow

And thank you for your interest in this RNA secondary structure prediction server. GenoPoemics (GP) is a program to visualize the secondary structure of long RNA. You can predict the secondary structure of a long RNA by vsfold5 (without pseudoknot) with sliding windows and the result is visualized by GP. You will receive a mail showing the URL of the result. Mark is input required field. Output results will be notified.). Input format of RNA sequence? Coding sequence region *.

5

vsfold4: RNA structure prediction server

http://www.rna.it-chiba.ac.jp/~vsfold/vsfold4

Where the folding landscape is always funnel shaped. The High Technology Research Center. Chiba Institute of Technology. And thank you for your interest in this RNA secondary structure prediction server. The current folding program is version 4.23. If you wish to use the older version 4.11, please go to the following link. Please feel free to contact the help desk. If you have any specific questions. May 27, 2015: The subopt version ( vs subopt. Only sequences less than 450 nt. Please read the [?

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